_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-20
 Query name: gi|1043260120|ref|NP_001316366.1| ethanolaminephosphotransferase 1 [Danio rerio]
 Query range: 1-400  (total 400)

 Target: /data/www-rg/seblastian_results/385685731/tempfiles/temptarget.fasta
 Chromosome: WARS01000046.1:subseq_12281132,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  105659       105715
 -Exon 2  102999       103067
 -Exon 3  102394       102502
 -Exon 4  101662       101736
 -Exon 5  100084       100346
 -Exon 6  99211        99319
 -Exon 7  99082        99130
 -Exon 8  98811        98991
 -Exon 9  98504        98683
 -Exon 10 97751        97855

 Redox box: no

Query   MALYHYVTQEQLSGFDKYK <---Intron---> YSAVDSNPLSIYVMHPFWNSVVK <---Intron---> VLPTWLAPNLITFTGFMFLVLTFTML
        |||| |||||||/|||||| <   2591bp   > ||||||||||/|||||||| ||| <   496bp    >  |||||||||||||||||||| | ||
Target  MALYEYVTQEQLAGFDKYK                YSAVDSNPLSVYVMHPFWNFVVK                FLPTWLAPNLITFTGFMFLVLNFLML
        agctgtgacgccggtgata                tagggtacctgtgaccttatgga                tccattgcacaatagtatcgcatcat
        tctaaatcaaatcgtaaaa                agctacactctattactgattta                ttccgtccattctcgttttttatttt
        gttcatctgggcgcccacg                ccggcatcgtccagctcgctagg                taaagagaccaatattgctggtctgg
                                                                                                            

Query   SFFDFDFYASG <---Intron---> EGHTHVPSWVWIAAGLFNFLAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        /|/|||| ||  <   657bp    >  || |||||||/|||/||||||||| <   1315bp   > |||||||||||||||||||||||||||||/||
Target  AFYDFDFNASA                TGHEHVPSWVWVAAGIFNFLAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACIFF
        gttgtgtagtg                agcgcgcatgtggggatattgtacg                ggggacgccaattaccggctgcgcgatgtatt
        ctaatatacc                ccgaaatcggtgtccgttattcact                agtagaacggcacccctgattaagtaggcgttt
        cctcccctct                taatacgttgcgttagccccgctgc                tctttagttccccccgggagtctcgccgccccc
                                                                                                            

Query   VATVYSVFGRGETGVSVVTLYYLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISIVYIITAVVGVETWYKPVFLNIHYRD
        ||||||/|||||/|| | ||||/|||||||||||||||||||||||||||||||| <   764bp    > |||/||//||||||||||/|/  // |||
Target  VATVYSIFGRGESGVGVATLYYILWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISMVYLVTAVVGVETWYQPILWHLLYRD
        ggagttatgcggagggggacttactggctttactctgataagatttctgtgaacg                aatagttgaggggggattccactccctag
        tcctacttgggaggtgtcctaattgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaacttgattaga
        gcctccatgtgatcactcagtccgggggcactgtcggatctccgtgcgactccag                cctgtcgaatacggaggcgacggccccac
                                                                                                            

Query   LFTVMIIG <---Intron---> CLFVVTLPMSLYNVFK <---Intron---> AYRNNTLKHSSLYEALLPFFSPVLLFVLSTLWISFSPTNIVQKQ
        /|| |||  <    80bp    > | | |||||||||| | <    90bp    > |/| ||||||||||| ||| |||||||||| |/ |||/||// |
Target  IFTFMIIA                CSFTVTLPMSLYNVLK                AHRGNTLKHSSLYEAFLPFLSPVLLFVLSTTWVVFSPSNILELQ
        atataaag                tttagaccaactagca                gccgaacacaattggtcctctcgcctgttaatggttctaacgcc
        ttctttt                cgctctctctgtaatta                caggactaaggtaacttcttccttttttcccgtttcccattata
        tcctgcc                ctcccgtacgccctcg                atcctcgggcctgcaccgcctctccgtcgtatggcccaccccggg
                                                                                                            

Query   PRIFYLMVGTAFSNVT <---Intron---> CKLIVCQMSNTRCKPLSLLLLPMSIVVLLVISGTVQGGESLVLFIWTAVVLLTHIHYGVSV <---In
        ||||||||||||/||| <   127bp    > |||||||||||||/||| |||||/ |||| //| |   |/|/|//||  |/| |||||||| <   64
Target  PRIFYLMVGTAFANVT                CKLIVCQMSNTRCQPLSWLLLPMTPVVLLAVTGVV-ANETLLLYLWTTAVILAHIHYGVSV       
        caattcaggagtgaga                tacagtcaaaactcccatccccaacggttggaggg-gagaccctctaaggacgcactggtg       
        cgttatttgcctcatc                gatttgatgacggactggtttctccttttctcgtt-caactttatgccctttcataagtct       
        cgccccgggatcttcg                tggtgtggtcatcgtgcggggcggaaggaagcggc-ctgcaggtgggttcagacacccaag       
                                                                                                            

Query   tron---> VKQLSDHFNIFAFSLKKPNSDUQDEEKIGLKAAEV
        8bp    > |/||| |||| ||||||||||||/||/|||| |||
Target           VQQLSGHFNIHAFSLKKPNSDUQEEERIGLKEAEV
                 gcccagctaacgttcaacaagtcgggcagtagggg
                 taatggatatactctaacagagaaaagtgtaacat
                 aagccccccccctctagcctcagggaaccgaaagt
                                      *             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1066 ; UGA-SECIS: 1105

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000046.1:subseq_12281132,200000_:subseq_0,120000_ Strand = - Positions = 96684 - 96598
 Found by:  Infernal (score=28.03) Covels (score=27.93)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -14.67

         ..(((((((..................(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg-----------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((..................([[(((((((((((..................)))))))))))]])..--..-.)))))))..
 target  UUGUGGUUUAGUUGCGCAGCGCUUGAAUGAAGAGUGUGUUCAAAAACCGUCAGCGGAGCGGACGCACUCUGAGGG--AA-CAAGCCGUCG
                                    ****          ^^^                         ****