_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-20
 Query name: gi|1039360004|ref|XP_008418530.2| PREDICTED: selenoprotein H [Poecilia reticulata]
 Query range: 5-126  (total 126)

 Target: /data/www-rg/seblastian_results/657608766/tempfiles/temptarget.fasta
 Chromosome: WARS01000042.1:subseq_508027,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  99145        99263
 -Exon 2  100014       100156
 -Exon 3  101060       101163

 Redox box: YES

Query   AGRRGTKRKAEEVQTFTEEKKEKGEEESGQNGLKVVIEHC <---Intron---> KSURVYGRNAEEVKSALLAARPGLTVVLNPEKPRRNSFEITLLD
        / |||||||||      /   |/ /|/ |/ | /|||||| <   750bp    > |||||||||||||||||||| |||||||||||||||||||||||
Target  SARRGTKRKAEAQVEEEKPSVEEKKEKDGEEGQRVVIEHC                KSURVYGRNAEEVKSALLAAHPGLTVVLNPEKPRRNSFEITLLD
        tgccgaacagggcggggactgggaagagggggcaggagct                aatcgtgcaggggatgccggccgcaggcacgacccaatgaactg
        ccgggcagacacataaaacctaaaaaaagaagagtttaag                agggtaggacaataccttccacgtctttacaacggagtatctta
        attagcgcaagtgagggaatgggggggtcgacaggctac                tgcaattgtttgggatccgtcctactgccctgaccgcccgctggt
                                                                  *                                         

Query   GGKE <---Intron---> TSLWTGIKKGPPRKLKFPQPDSVVAALHEALKTE
        |||| <   903bp    > ||||||||||||||/|||||| /|||| |||| |
Target  GGKE                TSLWTGIKKGPPRKMKFPQPDVIVAALQEALKAE
        ggag                atctagaaagcccaaatcccggagggccggcagg
        gga                acctgcgtaagccgatatcacatttcctaactaca
        aca                aatagtaaggtgttggattattcatttgggtgatg
                                                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1145 ; UGA-SECIS: 1382

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000042.1:subseq_508027,200000_:subseq_0,120000_ Strand = + Positions = 102309 - 102385
 Found by:  Infernal (score=16.64) Covels (score=28.79)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -11.39

         ..(((((((..........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({{({((((.......{[[{(((((({(((......-..........)))}))))))}]]}..--))-))})}})}).
 target  GUAGCCCAUGGAAGCAGAAUGAUGAAGAGCGACCAAUGA-GAAGUUCUCAGUCCCUCUUCUGAUGA--UC-CAAGCUCCAG
                            ****           ^^                        ****