_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-167
 Query name: gi|596823321|gb|ABI93489.2| iodothyronine deiodinase type III [Hippoglossus hippoglossus]
 Query range: 1-261  (total 261)

 Target: /data/www-rg/seblastian_results/49237849/tempfiles/temptarget.fasta
 Chromosome: WARS01000017.1:subseq_6957159,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  99988        100770

 Redox box: no

Query   MNTIKAXKNAIVCLVLLPRFLVAAVMFWLLDFICIRKRVFFRMKEQEGDAIDPPVCISDSNRLFSLESLKAVWHGHKLDFLKAAHLGHGAPNTEVVQLQD
        |||||| ||||||||||||||/||||||||||/|||||||| ||||| |/||||/||||||||||||||||||||||||||||||||||||||||||| |
Target  MNTIKAIKNAIVCLVLLPRFLMAAVMFWLLDFLCIRKRVFFSMKEQEVDSIDPPLCISDSNRLFSLESLKAVWHGHKLDFLKAAHLGHGAPNTEVVQLDD
        aaaaagaaagagtcgcccctcagggattccgtttaaaagttaaagcgggtagccctatgtacctacgtcaggtcgcacgtcaggccgcggcaagggccgg
        tactactaacttgttttcgtttcctttgttattgtgagtttgtaaaatactacctgtcacagttgtactactgagaatattaccatgagccacattataa
        gtttgttataccttcggcttggaacgtgctctacagagtctcgggggcccttttgcagccttcccggccgtggcctagctgaggtcacagcccattggtt
                                                                                                            

Query   QRRSRILDYVKDKRPLILNFGSCTUPPFMARLKAFQGVVQQNADIADSVVVYIEEAHPSDGWMSTDAPYQIPKHRCLEDRLNAAQLMRLEVPGCLLVVDS
        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||/||||
Target  QRRSRILDYAKDKRPLILNFGSCTUPPFMARLKAFQGVVQQNADIADSVVVYIEEAHPSDGWMSTDAPYQIPKHRCLEDRLNAAQLMHLEVPGCLVVVDS
        cccacacgtgagaaccacatgatatcctagccagtcgggccaggaggtgggtagggcctggtaaaggctcacacctcggccaggccaccggcgtcgggga
        aggggttaacaaagctttatgggcgccttcgtactagttaaacatcactttataacaccaggtgcaccaatcaaggtaagtaccattatatcggttttag
        ggcccccttagcgagcccctccccaagcggtgatcgacgggcataactatgcagagcccccggctcgctgccacgtggcggctggggcgggcccgcgccc
                                *                                                                           

Query   MENSSNAAYGAYFDRLYILQEGKIVYQGGRGPEGYRISELRDWLDQYRGRLEKSNNLVIHV
        ||||||||||||||||||||/||||||||||||||||/|||||||||| |||||/||||||
Target  MENSSNAAYGAYFDRLYILQDGKIVYQGGRGPEGYRITELRDWLDQYRERLEKSSNLVIHV
        agattaggtggttgactaccggaagtcggagcggtcaagcagtcgctagccgataacgacg
        taaccaccagcatagtattaagattaaggggcagagtcatgagtaaagagtaacgatttat
        gacccctgtattctattagacagatcgtcaatagtgcagcacggtacaagcaacttatttg
                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 374 ; UGA-SECIS: 782

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000017.1:subseq_6957159,200000_:subseq_0,120000_ Strand = + Positions = 101145 - 101221
 Found by:  Infernal (score=27.46) Covels (score=24.34)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -14.79

         ..(((((((.......(((((((((((((((................))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         ..(((((((.--....{[[((((((((((((................))))))))).)))]]}.....-.-.)))))))..
 target  CGUCAGUAUU--GUUGUGAAGUUCGGUUUUUAAACGGACUGAAUCCAGAGAACCGAGACUGAUGUUUU-U-CAUACUGGAG
                         ****           ^^^                         ****