_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-113
 Query name: gi|291170270|gb|ADD82413.1| iodothyronine deiodinase type 2 [Chrysiptera cyanea]
 Query range: 1-270  (total 271)

 Target: /data/www-rg/seblastian_results/561364465/tempfiles/temptarget.fasta
 Chromosome: WARS01000045.1:subseq_5243707,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  105348       105572
 -Exon 2  100000       100584

 Redox box: no

Query   MGTAGEDLLVTLQILPGFFSNCLFLALYDSVVLLKRAVSLLSCSRSAGCGEWRRMLTSEGLRSIWNSFLLDAYKQ <---Intron---> VKLGCEAPN
        || | ||||||||||||||||||||||||||||/|| ||||||||| | ||||||||| |||||||||||||||| <   4763bp   > |||||||||
Target  MGMASEDLLVTLQILPGFFSNCLFLALYDSVVLVKRLVSLLSCSRSTGSGEWRRMLTSSGLRSIWNSFLLDAYKQ                VKLGCEAPN
        agagaggccgaccaccgtttatctcgctgtggcgaccgtccattatagtggtccacattgcctataatctggtac                gacgtggca
        tgtcgaatttctattcgttcagtttctaacttttagttcttggcgccgcgagggttcccgtgctgagtttacaaa                tatggacca
        gcgctatgcgacgaacgctactgttcgttcgtcggctatgccccaccccaggctggcatgccccgtcctgcatag                gatctgacc
                                                                                                            

Query   SKVVKVPDGPRWSSAISSTTSVPCGAKIQNGDECRLLDFESSDRPLVVNFGSATUPPFISHLPAFRQLVEDFSDVADFVLVYIDEAHPSDGWVAPPMGSC
        ||/|||||  |||/ ||/ |/|| |//| ||||| |||||||||||||||||||||||||||||| ||||||||||||/|||||||||||||||||||||
Target  SKLVKVPDCLRWSNNISNMTNVPPGSRILNGDECHLLDFESSDRPLVVNFGSATUPPFISHLPAFCQLVEDFSDVADFLLVYIDEAHPSDGWVAPPMGSC
        tacgagcgtcctaaaaaaaaagccgtaacagggtcccgtgttgcccggatgtgatcctaacccgttctgggtaggggtctgtagggcctggtggccagtt
        cattatcagtgggaatgatcatccgcgttagaagattataccagctttatgcccgccttgatcctgattaatgatcattttataacaccaggtccctgcg
        caggggttctagcctcttgttaatccgcacatgcctattggatctggcctcaccaccccccgatccggggctttattcgagcttgttattcggcttgctt
                                                              *                                             

Query   SFSFRKHQNLEERMGAARKLIEHFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQQRKVAYLGGKGPFFYSLKDVRQWLEQSYGR
        / / |||||||||/||| |||||||||||||||||||||||||||||||||||||||||/|||||||||||/|||||||||||/|/
Target  ALNVRKHQNLEERLGAACKLIEHFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQQRKIAYLGGKGPFFYNLKDVRQWLEQSFGK
        gtagcaccacggccgggtacagcttcccctccgggtagaagaggtggtagcgtagccaaagtcggagctttacaggcctcgcatga
        ctatgaaaataagtgccgattaatctccagattcagtaaacatcagtcaagtgttaagatcatggagcttaataatgagtaagtga
        tatcgatacaaaaaaaacattgctcgtagtgggtctgcctttgtctgctaagtaaagagtatgtaggtttcttgtgggggggctta
                                                                                              
 Sequence until next stop: 
GGGTAG
 G  * 

 Distance CDS-SECIS: 2417 ; UGA-SECIS: 2810

------- SECIS element -- id:1 -- grade:C ----
 Chromosome = WARS01000045.1:subseq_5243707,200000_:subseq_0,120000_ Strand = - Positions = 97582 - 97508
 Found by:  Infernal (score=21.47) Covels (score=23.14)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -14.19

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(((((((--....{[[[(((({{{((((................))))}}}))))]]]}..--...)))))))...
 target  CAAAGGUGUG--UAAAUGAAGACCUUUGACGAAAGAGUGUCUGACUCUGUCUCUGGUUGGAUAG--UGCUGCACCUGGU
                         ****           ^^^                        ****