_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-28
 Query name: gi|923769232|ref|XP_013767932.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial-like [Pundamilia nyererei] >gi|930733273|ref|XP_014188564.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Haplochromis burtoni]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/168457530/tempfiles/temptarget.fasta
 Chromosome: WARS01000032.1:subseq_6182278,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  98534        98599
 -Exon 2  99354        99448
 -Exon 3  99591        99735
 -Exon 4  100000       100151
 -Exon 5  100746       100770
 -Exon 6  100883       100942
 -Exon 7  101182       101211

 Redox box: no

Query   MWLWRSSAVLSVVGSRGVVRSM <---Intron---> CAQVGDWHSAKSIYEFSAKDIDGDEVSLEKYR <---Intron---> GYVCIIVNVASKUG
        ||| | / /| /||||| |||| <   754bp    > |||||||||||||||||||||||/|||||||| <   142bp    > ||||||||||||||
Target  MWLLRPTVLLGLVGSRGAVRSM                CAQVGDWHSAKSIYEFSAKDIDGNEVSLEKYR                GYVCIIVNVASKUG
        atccacagttgtggaagggaaa                tgcgggtcagatatgttgagaggaggtcgata                gtgtaagaggtatg
        tgttgcctttgttggggctggt                gcatgagagcactaatccaatagaatctaaag                gatgtttatccagg
        ggcgagaggatgtgcatagatg                ttggacgcccgaatgctcgtttctggctgac                actgcctataccaaa
                                                                                                          * 

Query   KTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ <---Intron---> EPGTEAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKAQPKGKGTLG
        |||||||||||||||||||||||||||||||||| <   264bp    > ||||/|||||||||||||||||||||||||||||||||||||||||||||
Target  KTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ                EPGTDAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKAQPKGKGTLG
        aaagataccggacgttggagtcacgtctactggc                gcgagggaagtgagtaggtgctaaaggaggagccctataagccagagacg
        acgtaacatcgtaccacaagtgttgtcgaatgga                acgcacataatcagaacatattgatatagaacactgagtacacagagctg
        gcgacctgagagcccttgataccgctaccgtaag                gagttagtagttatcttgtccccgtggtacttctgggggaagcacgacga
                                                                                                            

Query   N <---Intron---> NIKWNFTK <---Intron---> FLINREGQVVKRYGPTDDPS <---Intron---> VVEKDLPTYL
        | <   594bp    > |||||||| <   112bp    > ||||||||||||||||/||| <   239bp    > |||||||/||
Target  N                NIKWNFTK                FLINREGQVVKRYGPTEDPS                VVEKDLPSYL
        a                aaatataa                tcaaaggcggaatgcaggca                gggagccttc
        a                atagatca                tttagagattagagccaacg                ttaaatccat
                        tccagccag                taataggagggatcaagtcc                tgggtgtacg
                                                                                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 73 ; UGA-SECIS: 445

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000032.1:subseq_6182278,200000_:subseq_0,120000_ Strand = + Positions = 101285 - 101357
 Found by:  Infernal (score=31.65) Covels (score=37.84)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -16.96

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .....((((.--....{[[{((((((((({(...............)})))))))))}]]}..--..-.)))).....
 target  UGUGUCUGGA--ACCAUGACGGUCUGUCUUUAAACCCAGCAUUGGGGUGGGCAGGCCUGAUGA--UC-CCCAGCGUGC
                         ****           ^^^                       ****