_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-21
 Query name: gi|1042301059|ref|XP_017346835.1| PREDICTED: 15 kDa selenoprotein [Ictalurus punctatus]
 Query range: 1-153  (total 153)

 Target: /data/www-rg/seblastian_results/482211079/tempfiles/temptarget.fasta
 Chromosome: WARS01000030.1:subseq_5857856,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  104992       105039
 -Exon 2  103881       104048
 -Exon 3  100979       101042
 -Exon 4  100361       100410
 -Exon 5  100000       100128

 Redox box: no

Query   MAAEVYLLWLLPLLQS <---Intron---> LAAFGAELSSEACRELGFSSNLLCSSCDLLGQFSLSPIEPFCRQCCQEEAQLESRK <---Intron-
        |/ |||||||| ||// <   943bp    > |/|/|||||||||||||||||||||||||||/|||/ //| ||||||/|||/| || <   2838bp 
Target  MSGEVYLLWLLSLLKT                LSAYGAELSSEACRELGFSSNLLCSSCDLLGEFSLTKLQPDCRQCCQQEAQMEGRK            
        atgggtcctcctctaa                ctgtgggcttggtagcgttaacctattgccggtacaacccgtccttccggcaggca            
        tcgatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtcatacaggaggaaacatagga            
        ggagatcggtcgtagg                gggctcgggtggcgggcccccggccctcgcggccccgcgcccagccgggcggagcg            
                                                                                                            

Query   --> LYPGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFKGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILK
          > || ||||||||||||||||||| <   568bp    > ||||/||||||||||| <   232bp    > ||||||||||||||||||||||||||
Target      LYAGAILEVCGUKLGRFPQVQA                FVRSEKPKMFKGLQIK                YVRGSDPVLKLLDDNGNIAEELSILK
            ctgggacggtgtacgatccgcg                tgaagacaatagccaa                tgagtgcgcactggagaagggcaaca
            tacgcttatgggatggtcata                cttggaacattagtata                atggcacttattaaagatcaatgtta
            cccgcccggtaaagggccaca                ttcgtaggggcgttgcg                cgacattaagtgctcgcctaaccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLDRI
        |||||||||||||||||
Target  WNTDSVEEFLSEKLDRI
        taagagggttagatgca
        gacagtaattgaatagt
        gcaccgggtgtgaacga
                         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 893 ; UGA-SECIS: 1100

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000030.1:subseq_5857856,200000_:subseq_0,120000_ Strand = - Positions = 99106 - 99032
 Found by:  Infernal (score=26.41) Covels (score=29.9)
 Stem2 length = 8   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -12.17

         ..(((((((..........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((..........{[[((({((((((.......--..........))))))})))]]}..--.--.)))))....
 target  UUGCUGAGCCGCCCGUUAGUGAAGACCUCACAGGAAACC--AGCACUGGGAUGUGAGUUCUGAUGU--A--UGCUCGUGAA
                            ****           ^^^                       ****