------- SECIS element -- id:1 -- grade:A ---- Chromosome = WARS01003208.1:subseq_102984,100000_ Strand = + Positions = 4544 - 4632 Found by: Infernal (score=13.95) Covels (score=21.92) Stem2 length = 9 Apical loop length = 20 Insertion in stem2 = 1, 0 Free Energy = -10.9 ..(((((((.............((((((((((.(((((................)))))))))))))))............))))))).. model uucggucaugcg------UuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc .({((({(((............{[[[(((((.((((....................)))))))))]]]}........-..)))})))}). target GGUUGUUUGGCCGCUGUAGGGAUGAAAGUCAAGCCUGUGAAGCUCCUGUAAGCACGAGGCUGACUGGAUGCCACUUU-GUUUACACAUUA **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = WARS01003208.1:subseq_102984,100000_ Strand = + Positions = 96079 - 96173 Found by: Infernal (score=11.28) Covels (score=6.94) Stem2 length = 11 Apical loop length = 19 Insertion in stem2 = 1, 0 Free Energy = -13.54 ..(((((((....................((((((((((((..(((.................))).)))))))))))).........))))))).. model uucggucaugcg-------------UuaAUGAcGgccuggc--ccuAAAcC--cuuuuuggggcgg-gccaggcCuGAUGuuu-uuucaugaccggc (({((((((....................{[[(((((((((.(((...................))))))))))))]]}.....-.-.))))))})) target CUUUGGCAGCAGGGAGGAGAAACAUUUUAUGAAUAUUGUGGAGUUUAAAAGGCAUAGCAAUAAUAGCCUGCAAUAUGAUGCUUC-G-UUUGCCAUGG **** ^^^ ****