------- SECIS element -- id:1 -- grade:B ----
 Chromosome = WARS01000094.1:subseq_102977,100000_ Strand = - Positions = 37939 - 37864
 Found by:  Infernal (score=15.31) Covels (score=10.01)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -19.53

         ..(((((((..........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .(([(((((..........([[((((((((((((...........----))))))))))))]]).....-.-.)))))])).
 target  GGGACACUUCCUCCUCACAUGAUCAUGUGACAAGAGCACAAACUG----UUUGUCACAUGAGAAGAUUA-A-UAAGUGGUCG
                            ****                                     ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = WARS01000094.1:subseq_102977,100000_ Strand = + Positions = 35974 - 36056
 Found by:  Infernal (score=14.18)
 Stem2 length = 9   Apical loop length = 27   Insertion in stem2 = 0, 0
 Free Energy = -14.83

         ..(((((((.......((((((((((((((...........................))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggu----------gggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....([[((((((({(((...........................)))})))))))]])..--....))))))...
 target  UUCUCAGGC---UGCAUGAGGUGUUUUUCUACUGUCUGACAGGCUCUUUGGAAAAACAGAUAAGCACUGAACC--UACUGCUUGACCG
                         ****                                               ****                 

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = WARS01000094.1:subseq_102977,100000_ Strand = - Positions = 45526 - 45441
 Found by:  Infernal (score=11.59) Covels (score=20.62)
 Stem2 length = 8   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -9.8

         ..(((((((..........(((((((((((((((.................)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         (({((((((..........{[[{({(((((((.....................)))))))})}]]}........-...))))))}))
 target  CAUUAGCAUCACAUGCUGAUGAUUGUAUCAAAACAAAGCCUAUGGUAGAAGUGUUUGAUAGAUGAUGUCAAGGC-ACAGUGCUACUG
                            ****           ^^^                         ****