TBLASTN 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 10,816 sequences; 612,774,492 total letters Query= SPP00000661_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Zebrafish Length=611 Score E Sequences producing significant alignments: (Bits) Value ML171103.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 189 3e-57 ML171012.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 97.8 1e-19 ML171052.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 51.2 6e-14 ML171051.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 60.5 5e-08 ML171030.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 50.8 5e-05 ML171023.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 43.1 0.009 >ML171103.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold100, whole genome shotgun sequence Length=1128060 Score = 189 bits (481), Expect(2) = 3e-57, Method: Compositional matrix adjust. Identities = 101/191 (53%), Positives = 110/191 (58%), Gaps = 77/191 (40%) Frame = -1 Query 135 ATLGKKVMVLDYVVPTPQGTAWG-----------------------------LGGTCVNV 165 A LGKKVMVLDYVVPTP+GT WG LGGTCVNV Sbjct 150474 AMLGKKVMVLDYVVPTPKGTTWGKTRQDTW*DTRDALYIFKLLMRNRCGRSGLGGTCVNV 150295 Query 166 GCIPKKLMHQTALLGTAMEDARKFGWEFAE------------------------------ 195 GCIPKKLMHQTA+LGTAM+DARKFGWEF+E Sbjct 150294 GCIPKKLMHQTAVLGTAMQDARKFGWEFSETGEGSERRPRRSRRGDITPVCRGKSEASPV 150115 Query 196 ------------------QVTHNWETMKTAVNNYIGSLNWGYRVSLRDKNVNYVNAYAEF 237 VTHNW+TMKTAVNNYIGSLNWGYRV+LRDK+VNYVNAYAEF Sbjct 150114 SSHLLASH*YLLTAVCLHSVTHNWDTMKTAVNNYIGSLNWGYRVALRDKDVNYVNAYAEF 149935 Query 238 VEPHKIKASAT 248 +EPHKIK SA+ Sbjct 149934 IEPHKIKVSAS 149902 Score = 56.2 bits (134), Expect(2) = 3e-57, Method: Compositional matrix adjust. Identities = 27/39 (69%), Positives = 32/39 (82%), Gaps = 0/39 (0%) Frame = -3 Query 96 KAHKDGVLQKLLGEGSEVYDYDLIVIGGGSGGLACSKAT 134 +AH DG L++LL +E Y+YDLIVIGGGSGGLACSK T Sbjct 150703 QAHGDGSLKQLLSGDNEAYEYDLIVIGGGSGGLACSKVT 150587 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 70/78 (90%), Positives = 75/78 (96%), Gaps = 0/78 (0%) Frame = -1 Query 284 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 343 TSDDLFSLP+CPGKTLV+GASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMA+RAGE Sbjct 148488 TSDDLFSLPHCPGKTLVIGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMANRAGE 148309 Query 344 YMETHGVKFLRKFVPTKV 361 +ME HGVKFLR +VP KV Sbjct 148308 HMEDHGVKFLRHYVPVKV 148255 Score = 89.4 bits (220), Expect(2) = 2e-32, Method: Compositional matrix adjust. Identities = 40/45 (89%), Positives = 42/45 (93%), Gaps = 0/45 (0%) Frame = -2 Query 546 RVIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEI 590 RVIGFHYLGPNAGEVTQGFG AMKCG TK+QLD TIGIHPTCAE+ Sbjct 143867 RVIGFHYLGPNAGEVTQGFGIAMKCGATKEQLDGTIGIHPTCAEV 143733 Score = 73.9 bits (180), Expect(2) = 2e-32, Method: Compositional matrix adjust. Identities = 30/37 (81%), Positives = 34/37 (92%), Gaps = 0/37 (0%) Frame = -1 Query 511 LEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLRV 547 L+VYHS FWPLEFTV GRDNN+CY KIICNKLDN+R+ Sbjct 144078 LQVYHSQFWPLEFTVAGRDNNRCYGKIICNKLDNVRL 143968 Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 47/54 (87%), Positives = 52/54 (96%), Gaps = 0/54 (0%) Frame = -3 Query 424 KNGKVPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGATMKC 477 +NGK+PVNDEEQTNVPH+YAIGDILEGKWELTPVAIQAGKLLARRLY G+T+K Sbjct 145654 RNGKIPVNDEEQTNVPHVYAIGDILEGKWELTPVAIQAGKLLARRLYKGSTLKV 145493 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/39 (87%), Positives = 37/39 (95%), Gaps = 0/39 (0%) Frame = -1 Query 246 SATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCIT 284 ATNKRGKET +TAA+FVLATGERPRYLGIPGDKE+CIT Sbjct 149049 QATNKRGKETLHTAARFVLATGERPRYLGIPGDKEYCIT 148933 Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 39/45 (87%), Gaps = 0/45 (0%) Frame = -1 Query 472 GATMKCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEVYHS 516 +++CDYVNVPTTVFTP+EYGSCG E++A ++YGQ+NLEV H+ Sbjct 144546 SVSVQCDYVNVPTTVFTPLEYGSCGLSEDRATELYGQDNLEVTHT 144412 Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/43 (70%), Positives = 35/43 (81%), Gaps = 0/43 (0%) Frame = -2 Query 60 EDGTNYQDLLHEMTGQKTVPNVFINKKHIGGCDNTMKAHKDGV 102 EDGTNYQ++L EMTGQK+VPNVFINK H+GGCD TM+ V Sbjct 151016 EDGTNYQEMLLEMTGQKSVPNVFINKMHVGGCDKTMQVRSTSV 150888 Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 26/44 (59%), Positives = 39/44 (89%), Gaps = 0/44 (0%) Frame = -1 Query 1 MPPIENDAGREQIRSKIKELIDSSAVVVFSKSFCPFCVKVKDLF 44 MPPI+ND G+ +++S+I++LIDS+ V+VFSKS+CP+CVKV+ F Sbjct 152676 MPPIDNDTGKNELKSRIQQLIDSNQVMVFSKSYCPYCVKVRQ*F 152545 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/42 (67%), Positives = 35/42 (83%), Gaps = 1/42 (2%) Frame = -2 Query 359 TKVGCI-FPQIEQLEAGTPGRIKVTAKSTESEEVFEGEYNTV 399 T C+ Q+E+LEAG+PGR+KVTAKSTE++EV EGEYNTV Sbjct 147974 TLCACVCVSQVEELEAGSPGRLKVTAKSTETDEVIEGEYNTV 147849 >ML171012.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Length=11052619 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 74/150 (49%), Gaps = 62/150 (41%) Frame = +2 Query 114 YDYDLIVIGGGSGGLACSK------------ATA-------------------------- 135 YDYDL+VIGGGSGGLACSK A+A Sbjct 7098497 YDYDLVVIGGGSGGLACSKEGEIIF*SSCIYASAH*CLSNHTLTIYLYLQQHSWDRKLLS 7098676 Query 136 -TLGKKVMVLDYVVP-------------TP----------QGTAWGLGGTCVNVGCIPKK 171 + + + Y+VP TP GT WGLGGTCVNVGCIPKK Sbjct 7098677 *IMWSHLFKVKYIVPDSYNNDSLLFYFKTPLRIYFLNVFQTGTKWGLGGTCVNVGCIPKK 7098856 Query 172 LMHQTALLGTAMEDARKFGWEFAEQVTHNW 201 LMHQ ALLGTA++DA+K+GW+ + + H+W Sbjct 7098857 LMHQAALLGTAVKDAKKYGWQISGPICHDW 7098946 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +2 Query 304 SYVALECGGFLAGLGLDVTIMVRSILLRGFDQ 335 S VALEC GFL G+GLD T+MVRSI LRGFDQ Sbjct 7105463 SDVALECAGFLTGIGLDTTVMVRSIALRGFDQ 7105558 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/47 (47%), Positives = 33/47 (70%), Gaps = 0/47 (0%) Frame = +2 Query 403 VGRDACTGKIGLDKAGVKINEKNGKVPVNDEEQTNVPHIYAIGDILE 449 +GR T +GLDK GV++ ++ GK+ + +E T+VP+IYA GDI E Sbjct 7111130 LGRAPETKALGLDKLGVELKKETGKIILGSDESTSVPNIYAFGDIGE 7111270 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/45 (49%), Positives = 28/45 (62%), Gaps = 0/45 (0%) Frame = +1 Query 567 AMKCGITKDQLDNTIGIHPTCAEIFTTMEVTKSSGGDITQSGCXG 611 ++CG T L T+GIHPTCAE + +TK SG D T +GC G Sbjct 7116772 CLRCGATYSHLLQTVGIHPTCAEEVIKVNITKRSGLDATVTGC*G 7116906 >ML171052.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold49, whole genome shotgun sequence Length=3141143 Score = 51.2 bits (121), Expect(2) = 6e-14, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 12/76 (16%) Frame = +3 Query 286 DDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGEYM 345 +DL SL + PG+TLVVG S LEC +M++ LL GFDQ A + YM Sbjct 2548182 EDLLSLLHPPGRTLVVGGSAEGLEC------------VMLQPDLLPGFDQKTAQKIENYM 2548325 Query 346 ETHGVKFLRKFVPTKV 361 GV FL TKV Sbjct 2548326 IISGVDFLYHCSLTKV 2548373 Score = 49.7 bits (117), Expect(2) = 6e-14, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 0/38 (0%) Frame = +2 Query 247 ATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCIT 284 AT+ GK+ TA V+ATG+RP+YLG+PGD+E C+T Sbjct 2547959 ATDVNGKKRRLTAETMVIATGDRPQYLGVPGDREHCLT 2548072 Score = 50.4 bits (119), Expect(2) = 1e-13, Method: Compositional matrix adjust. Identities = 18/43 (42%), Positives = 31/43 (72%), Gaps = 0/43 (0%) Frame = +2 Query 511 LEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLRVIGFHYL 553 L+VYH+ +WPLE+ +P R+ N CY K+IC+ D++ ++ + L Sbjct 2550230 LQVYHTYYWPLEWALPARNKNSCYVKVICHIPDHV*LLFIYLL 2550358 Score = 49.3 bits (116), Expect(2) = 1e-13, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 28/38 (74%), Gaps = 0/38 (0%) Frame = +3 Query 476 KCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEV 513 +CDY NVPT V T +EY +CG EEKA +G+E++EV Sbjct 2550048 QCDYTNVPTVVLTLLEYAACGLSEEKANLTFGEESVEV 2550161 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/78 (45%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +1 Query 517 LFWPLEFTVPGRDNNKCYAK--IICNKL--DNLRVIGFHYLGPNAGEVTQGFGAAMKCGI 572 LF P E + + C I CN R +G H +GP AG++ QGF AAMKCG+ Sbjct 2553502 LFRPAEKALLALTAHHCSNLW*IHCNTAVSQQDRAVGVHVMGPIAGDILQGFVAAMKCGL 2553681 Query 573 TKDQLDNTIGIHPTCAEI 590 TK QLD T+GIHP A + Sbjct 2553682 TKRQLDTTVGIHPGSALV 2553735 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/81 (35%), Positives = 41/81 (51%), Gaps = 1/81 (1%) Frame = +2 Query 393 EGEYNTVLIAVGRDACTGKIGLDKAGVKINE-KNGKVPVNDEEQTNVPHIYAIGDILEGK 451 G +N + G+ L V + G++ VN +QT+V HIYAI + G+ Sbjct 2549681 RGAFNQSTFILTSQCVRGRFCLGCVCVYFSVCSTGRILVNKSDQTSVDHIYAIVSVQHGR 2549860 Query 452 WELTPVAIQAGKLLARRLYAG 472 T +++ AG LLARRLY G Sbjct 2549861 PSTTGLSVHAGTLLARRLYGG 2549923 >ML171051.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold48, whole genome shotgun sequence Length=2947308 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/61 (43%), Positives = 38/61 (62%), Gaps = 0/61 (0%) Frame = +1 Query 18 KELIDSSAVVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTGQKT 77 +E++ + VV+FSK+ CP+C K++F E+ Y IELD DG Q L +MTG +T Sbjct 1148113 QEMVSQNCVVIFSKTTCPYCKMAKNVFNEIGATYKVIELDEHNDGRRMQKALAQMTGART 1148292 Query 78 V 78 V Sbjct 1148293 V 1148295 >ML171030.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold27, whole genome shotgun sequence Length=5900740 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/49 (47%), Positives = 29/49 (59%), Gaps = 0/49 (0%) Frame = +2 Query 546 RVIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEIFTTM 594 +V+G H G E+ QGF A+K G TK D T+ IHPT +E F TM Sbjct 350735 QVVGLHMQGLGCDEMLQGFAVAIKMGATKADFDKTVAIHPTSSEEFVTM 350881 >ML171023.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold20, whole genome shotgun sequence Length=7410270 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = +1 Query 26 VVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTGQKTVPNVFINK 85 V V+S CP CV+ K L V ++L + + E+TG+ +VP +F N Sbjct 2729638 VTVYSIQGCPHCVQAKATLGRLGVPVCDVDLG---RHPQLRARVKELTGRSSVPQIFFNN 2729808 Query 86 KHIGGCDNTMK 96 H+GG D+ K Sbjct 2729809 IHVGGNDDLQK 2729841 Lambda K H a alpha 0.318 0.137 0.417 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 98196113488 Database: genome.fa Posted date: Oct 26, 2019 7:49 PM Number of letters in database: 612,774,492 Number of sequences in database: 10,816 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40