TBLASTN 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 10,816 sequences; 612,774,492 total letters Query= SPP00000660_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Zebrafish Length=486 Score E Sequences producing significant alignments: (Bits) Value ML171103.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 123 1e-31 ML171012.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 96.7 2e-31 ML171052.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 40.8 1e-07 ML171030.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 43.9 0.004 >ML171103.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold100, whole genome shotgun sequence Length=1128060 Score = 123 bits (308), Expect(2) = 1e-31, Method: Compositional matrix adjust. Identities = 70/190 (37%), Positives = 90/190 (47%), Gaps = 77/190 (41%) Frame = -1 Query 18 KEAAQLGQKVAVLDYVEPSLKGTKWG-----------------------------LGGTC 48 +EAA LG+KV VLDYV P+ KGT WG LGGTC Sbjct 150483 QEAAMLGKKVMVLDYVVPTPKGTTWGKTRQDTW*DTRDALYIFKLLMRNRCGRSGLGGTC 150304 Query 49 VNVGCIPKKLMHQAALLGTAVKDARKYGWQIPET-------------------------- 82 VNVGCIPKKLMHQ A+LGTA++DARK+GW+ ET Sbjct 150303 VNVGCIPKKLMHQTAVLGTAMQDARKFGWEFSETGEGSERRPRRSRRGDITPVCRGKSEA 150124 Query 83 ----------------------LSHDWPTMAEAVQNHVRSLNWGHRVQLQDKKVKYLNMK 120 ++H+W TM AV N++ SLNWG+RV L+DK V Y+N Sbjct 150123 SPVSSHLLASH*YLLTAVCLHSVTHNWDTMKTAVNNYIGSLNWGYRVALRDKDVNYVNAY 149944 Query 121 GTLLDKHTVR 130 ++ H ++ Sbjct 149943 AEFIEPHKIK 149914 Score = 37.0 bits (84), Expect(2) = 1e-31, Method: Compositional matrix adjust. Identities = 16/18 (89%), Positives = 18/18 (100%), Gaps = 0/18 (0%) Frame = -3 Query 1 DYDLVVIGGGSGGLACSK 18 +YDL+VIGGGSGGLACSK Sbjct 150646 EYDLIVIGGGSGGLACSK 150593 Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 58/92 (63%), Gaps = 8/92 (9%) Frame = -1 Query 169 TSDDIFWLKESPKKTLIIGASYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQMSGLVTD 228 TSDD+F L P KTL+IGASYV+LEC GFL G+GLD ++MVRSI LRGFDQ M+ + Sbjct 148488 TSDDLFSLPHCPGKTLVIGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMANRAGE 148309 Query 229 YMETYGTKFHWKCTPKSVEKLPSGHLQVTWMD 260 +ME +G KF P V V W D Sbjct 148308 HMEDHGVKFLRHYVPVKV--------SVRWTD 148237 Score = 69.3 bits (168), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 29/44 (66%), Positives = 34/44 (77%), Gaps = 0/44 (0%) Frame = -2 Query 421 RVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAE 464 RV+G H+ GPNAGEVTQGF + +CG T E L T+GIHPTCAE Sbjct 143867 RVIGFHYLGPNAGEVTQGFGIAMKCGATKEQLDGTIGIHPTCAE 143736 Score = 42.7 bits (99), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 20/42 (48%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Frame = -1 Query 386 IEVYHAFYKPLEFTVAERDATQCYIKVVCLREGDQRV-LGLH 426 ++VYH+ + PLEFTVA RD +CY K++C + + R+ L LH Sbjct 144078 LQVYHSQFWPLEFTVAGRDNNRCYGKIICNKLDNVRLPLRLH 143953 Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 0/50 (0%) Frame = -3 Query 300 TGKIIVAADEATSVPNIFAIGDIGEGRPELTPTAIKAGKLLAHRLAGRST 349 GKI V +E T+VP+++AIGDI EG+ ELTP AI+AGKLLA RL ST Sbjct 145651 NGKIPVNDEEQTNVPHVYAIGDILEGKWELTPVAIQAGKLLARRLYKGST 145502 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/39 (59%), Positives = 28/39 (72%), Gaps = 0/39 (0%) Frame = -1 Query 353 NYENVATTVFTPLEYGCVGLSEEEAERRHGKDQIEVYHA 391 +Y NV TTVFTPLEYG GLSE+ A +G+D +EV H Sbjct 144528 DYVNVPTTVFTPLEYGSCGLSEDRATELYGQDNLEVTHT 144412 >ML171012.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Length=11052619 Score = 96.7 bits (239), Expect(3) = 2e-31, Method: Compositional matrix adjust. Identities = 43/49 (88%), Positives = 45/49 (92%), Gaps = 0/49 (0%) Frame = +2 Query 39 GTKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDARKYGWQIPETLSHDW 87 GTKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDA+KYGWQI + HDW Sbjct 7098800 GTKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDAKKYGWQISGPICHDW 7098946 Score = 43.1 bits (100), Expect(3) = 2e-31, Method: Compositional matrix adjust. Identities = 19/19 (100%), Positives = 19/19 (100%), Gaps = 0/19 (0%) Frame = +2 Query 1 DYDLVVIGGGSGGLACSKE 19 DYDLVVIGGGSGGLACSKE Sbjct 7098500 DYDLVVIGGGSGGLACSKE 7098556 Score = 39.7 bits (91), Expect(3) = 2e-31, Method: Compositional matrix adjust. Identities = 18/20 (90%), Positives = 20/20 (100%), Gaps = 0/20 (0%) Frame = +1 Query 20 AAQLGQKVAVLDYVEPSLKG 39 AAQLGQKVAVLDYVEPS++G Sbjct 7098646 AAQLGQKVAVLDYVEPSVQG 7098705 Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 88/176 (50%), Gaps = 40/176 (23%) Frame = +1 Query 211 RSIALRGFDQQMSGLVTDYMETYGTKFHWKCTPKSVEKLPSGHLQVTWMDLNTKEEHQDT 270 + I GF QQM+GLVTDYM+ YGTKF WKC PKSVEKL SG LQVTW D +T +EH+DT Sbjct 7105633 KCILSFGFMQQMAGLVTDYMDAYGTKFAWKCVPKSVEKLSSGALQVTWTDTHTGDEHKDT 7105812 Query 271 FNSVLWAVGRA---------------------------------PETKTLNLEKVGVKIN 297 ++SVLWAVG + ++ +L+LE G +N Sbjct 7105813 YDSVLWAVGESMHVAVCGSVHLNLKQA*IHVIM*SRTFKYGNMLQKSFSLHLEATGSSLN 7105992 Query 298 KETGKIIVAADEATSVPNIFAIGDIGEGRPELTPTAIKAGKLLAHRLAGRSTELMN 353 +E +V A + A G + GR + + L+H+ G +L + Sbjct 7105993 REQHVEVVEA-------HCVASGHLSRGRAKALDLRLGQKSDLSHKSEGSILDLYS 7106139 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/48 (71%), Positives = 38/48 (79%), Gaps = 0/48 (0%) Frame = +1 Query 439 FALGFQCGLTYEHLRNTVGIHPTCAEELTKLNITKRSGLDATVTGCXG 486 + +CG TY HL TVGIHPTCAEE+ K+NITKRSGLDATVTGC G Sbjct 7116763 VCMCLRCGATYSHLLQTVGIHPTCAEEVIKVNITKRSGLDATVTGC*G 7116906 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/60 (60%), Positives = 46/60 (77%), Gaps = 4/60 (7%) Frame = +2 Query 269 DTFNSVLW----AVGRAPETKTLNLEKVGVKINKETGKIIVAADEATSVPNIFAIGDIGE 324 D S+ W +GRAPETK L L+K+GV++ KETGKII+ +DE+TSVPNI+A GDIGE Sbjct 7111091 DLIFSLCWFLPSTLGRAPETKALGLDKLGVELKKETGKIILGSDESTSVPNIYAFGDIGE 7111270 Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/33 (85%), Positives = 31/33 (94%), Gaps = 0/33 (0%) Frame = +2 Query 412 VVCLREGDQRVLGLHFTGPNAGEVTQGFALGFQ 444 VVC R G+Q++LGLHFTGPNAGEVTQGFALGFQ Sbjct 7115840 VVCERGGEQKILGLHFTGPNAGEVTQGFALGFQ 7115938 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/36 (83%), Positives = 31/36 (86%), Gaps = 0/36 (0%) Frame = +3 Query 325 GRPELTPTAIKAGKLLAHRLAGRSTELMNYENVATT 360 GRPELTPTAIKAGKLLA RL G STELMNY+NV T Sbjct 7112400 GRPELTPTAIKAGKLLARRLTGHSTELMNYDNVRHT 7112507 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/34 (85%), Positives = 32/34 (94%), Gaps = 0/34 (0%) Frame = +2 Query 189 SYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQM 222 S V+LECAGFLTGIGLDT+VMVRSIALRGFDQ + Sbjct 7105463 SDVALECAGFLTGIGLDTTVMVRSIALRGFDQVL 7105564 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/30 (90%), Positives = 28/30 (93%), Gaps = 0/30 (0%) Frame = +1 Query 359 TTVFTPLEYGCVGLSEEEAERRHGKDQIEV 388 TTVFTPLEY CVGLSEEEAE+RHGKD IEV Sbjct 7113604 TTVFTPLEYACVGLSEEEAEKRHGKDGIEV 7113693 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/24 (96%), Positives = 24/24 (100%), Gaps = 0/24 (0%) Frame = +2 Query 89 TMAEAVQNHVRSLNWGHRVQLQDK 112 TMAEA+QNHVRSLNWGHRVQLQDK Sbjct 7099361 TMAEAIQNHVRSLNWGHRVQLQDK 7099432 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/24 (83%), Positives = 23/24 (96%), Gaps = 0/24 (0%) Frame = +1 Query 389 YHAFYKPLEFTVAERDATQCYIKV 412 Y+AFYKPLEF VAERDA+QCY+KV Sbjct 7114903 YNAFYKPLEFIVAERDASQCYLKV 7114974 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/25 (76%), Positives = 22/25 (88%), Gaps = 0/25 (0%) Frame = +1 Query 159 HVPGAMEFGITSDDIFWLKESPKKT 183 +PGAME GI+SDDIFWLK+SP KT Sbjct 7101109 QIPGAMEHGISSDDIFWLKKSPGKT 7101183 >ML171052.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold49, whole genome shotgun sequence Length=3141143 Score = 40.8 bits (94), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 13/29 (45%), Positives = 21/29 (72%), Gaps = 0/29 (0%) Frame = +2 Query 386 IEVYHAFYKPLEFTVAERDATQCYIKVVC 414 ++VYH +Y PLE+ + R+ CY+KV+C Sbjct 2550230 LQVYHTYYWPLEWALPARNKNSCYVKVIC 2550316 Score = 37.4 bits (85), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (64%), Gaps = 0/36 (0%) Frame = +3 Query 353 NYENVATTVFTPLEYGCVGLSEEEAERRHGKDQIEV 388 +Y NV T V T LEY GLSEE+A G++ +EV Sbjct 2550054 DYTNVPTVVLTLLEYAACGLSEEKANLTFGEESVEV 2550161 Score = 41.6 bits (96), Expect(2) = 5e-06, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 13/83 (16%) Frame = +3 Query 171 DDIFWLKESPKKTLIIGASYVSLECAGFLTGIGLDTSVMVRSIALRGFDQQMSGLVTDYM 230 +D+ L P +TL++G S LEC VM++ L GFDQ+ + + +YM Sbjct 2548182 EDLLSLLHPPGRTLVVGGSAEGLEC------------VMLQPDLLPGFDQKTAQKIENYM 2548325 Query 231 ETYGTKFHWKCT-PKSVEKLPSG 252 G F + C+ K + K+ +G Sbjct 2548326 IISGVDFLYHCSLTKVLSKIKTG 2548394 Score = 31.2 bits (69), Expect(2) = 5e-06, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 25/40 (63%), Gaps = 1/40 (3%) Frame = +2 Query 130 RAVNAQGKEMTVTARNILLATGGRPKYPTHVPGAMEFGIT 169 +A + GK+ +TA +++ATG RP+Y VPG E +T Sbjct 2547956 QATDVNGKKRRLTAETMVIATGDRPQY-LGVPGDREHCLT 2548072 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Frame = +1 Query 421 RVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCA 463 R +G+H GP AG++ QGF +CGLT L TVGIHP A Sbjct 2553601 RAVGVHVMGPIAGDILQGFVAAMKCGLTKRQLDTTVGIHPGSA 2553729 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 0/48 (0%) Frame = +2 Query 299 ETGKIIVAADEATSVPNIFAIGDIGEGRPELTPTAIKAGKLLAHRLAG 346 TG+I+V + TSV +I+AI + GRP T ++ AG LLA RL G Sbjct 2549777 STGRILVNKSDQTSVDHIYAIVSVQHGRPSTTGLSVHAGTLLARRLYG 2549920 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 1/37 (3%) Frame = +1 Query 45 GGTCVNVGCIPKKLMHQAALLGTAVKDARKYGWQIPE 81 GG+ +N+ I ++ + QA+LLG A++D++KYGW++ E Sbjct 2546425 GGSSLNMDSI-RRFLQQASLLGKAIQDSQKYGWRLKE 2546532 >ML171030.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold27, whole genome shotgun sequence Length=5900740 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 0/50 (0%) Frame = +2 Query 421 RVLGLHFTGPNAGEVTQGFALGFQCGLTYEHLRNTVGIHPTCAEELTKLN 470 +V+GLH G E+ QGFA+ + G T TV IHPT +EE + Sbjct 350735 QVVGLHMQGLGCDEMLQGFAVAIKMGATKADFDKTVAIHPTSSEEFVTMR 350884 Lambda K H a alpha 0.317 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 73249125204 Database: genome.fa Posted date: Oct 26, 2019 7:49 PM Number of letters in database: 612,774,492 Number of sequences in database: 10,816 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40