TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000657_2.0 # Protein # Selenoprotein W (SELENOW) # Zebrafish

Length=95
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171043.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  48.5    1e-06
ML171011.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  38.9    0.002


>ML171043.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold40, whole genome shotgun sequence
Length=5183279

 Score = 48.5 bits (114),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 24/27 (89%), Gaps = 0/27 (0%)
 Frame = -2

Query  43       GSFEIEINGQLIFSKLETSGFPYEDDI  69
                GSFEIE+NGQLIFSKLE  GFP EDD+
Sbjct  2322874  GSFEIELNGQLIFSKLELGGFPKEDDV  2322794


 Score = 47.0 bits (110),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 21/32 (66%), Positives = 26/32 (81%), Gaps = 0/32 (0%)
 Frame = -2

Query  14       GYEPRYQELKRVVTAEFTDADVSGFVGRQGSF  45
                GYEPRY+EL  VV  +F DA++SGFVGRQG +
Sbjct  2323132  GYEPRYRELYSVVKRDFPDAELSGFVGRQGEY  2323037


 Score = 41.2 bits (95),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 23/27 (85%), Gaps = 0/27 (0%)
 Frame = -2

Query  69       IMGVIQRAYDGQPVEKITKSQPPCVIL  95
                ++  IQ+A+DG+PV KITKS+ PCVI+
Sbjct  2322565  VLAEIQKAHDGKPVMKITKSRAPCVIM  2322485


>ML171011.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold8, whole genome shotgun sequence
Length=11414287

 Score = 38.9 bits (89),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 25/34 (74%), Gaps = 0/34 (0%)
 Frame = +3

Query  41       RQGSFEIEINGQLIFSKLETSGFPYEDDIMGVIQ  74
                R GSFE+++NGQLIFSKL+   FP   ++  +++
Sbjct  2384466  RTGSFEVKVNGQLIFSKLQKGKFPDPKEVSVLVR  2384567



Lambda      K        H        a         alpha
   0.319    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5087526100


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40