TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000655_2.0 # Protein # Selenoprotein X2 (SELENOX2) # Zebrafish

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171020.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  92.8    3e-31


>ML171020.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold17, whole genome shotgun sequence
Length=8097053

 Score = 92.8 bits (229),  Expect(2) = 3e-31, Method: Compositional matrix adjust.
 Identities = 62/115 (54%), Positives = 72/115 (63%), Gaps = 31/115 (27%)
 Frame = -1

Query  139      SPHVKSSMLSGSLKSVWRAMTSPVfdfqgdpqqqggALIVGPG-----------------  181
                SPHVKS +  G LKS+WRAMTSP FDFQGD  QQGGA+I GPG                 
Sbjct  2792375  SPHVKSGIFMGQLKSIWRAMTSPAFDFQGDMHQQGGAIIAGPGNLSSLSLSLSLSASLYL  2792196

Query  182      -------------PDVHFAHFDMNRLDHMPINWLLQLAGL-PALDFSDSPKIINI  222
                             P V+F+HFDMNRLDHMPI+WLLQLAG+   LDFSD PKI+++
Sbjct  2792195  SLFLPHSFPLSAGPQVNFSHFDMNRLDHMPIDWLLQLAGVQQTLDFSDKPKILHV  2792031


 Score = 63.5 bits (153),  Expect(2) = 3e-31, Method: Compositional matrix adjust.
 Identities = 26/51 (51%), Positives = 37/51 (73%), Gaps = 0/51 (0%)
 Frame = -3

Query  85       NVRLVVIGQSSYSHIQGFCSLTGFPHEIYVDPERQIYKRLGLRRGETYMET  135
                +   V +    +  +Q FCSLTG+PHEIYVDPER IY++LG++R ETY ++
Sbjct  2792631  SATFVPVQHLDFQSLQPFCSLTGYPHEIYVDPERCIYQKLGMKREETYTDS  2792479


 Score = 49.7 bits (117),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 37/58 (64%), Gaps = 0/58 (0%)
 Frame = -1

Query  2        AVHPITRQISSSVQDNKQASHNICLSELKNCFIFDRHGDKKSFSSLFEHNKAIVIFVR  59
                A+ PITRQ++   Q+    S +  L ++++C I+DRHG    F  L++  K+++IFVR
Sbjct  2793395  ALSPITRQVAKENQEIGTPSVDYRLEDVEDCLIYDRHGVPVPFKKLYQDRKSVIIFVR  2793222


 Score = 41.6 bits (96),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 17/27 (63%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
 Frame = -3

Query  58       VRHFLCYTCKEYVEDLGKIPQHVLQDS  84
                +++FLCY+CKEYVEDL KIP   L+ S
Sbjct  2792913  LQNFLCYSCKEYVEDLSKIPGEALEVS  2792833



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21518371848


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40