TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000652_2.0 # Protein # Selenoprotein X1a (SELENOX1a) #
Zebrafish

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171006.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  109     5e-26
ML171007.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  82.0    1e-16


>ML171006.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold3, whole genome shotgun sequence
Length=18008530

 Score = 109 bits (272),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 26/100 (26%)
 Frame = -2

Query  67       LKAKALWEKSGAVIMAVRRPGXFLCRE--------------------------EASELSS  100
                +KAK+LW+ +GAV+MAVRRPG FLCRE                          EASELSS
Sbjct  9516057  IKAKSLWDMNGAVVMAVRRPG*FLCREVIHMTQS*NVYSVWEYYLL*RYLSL*EASELSS  9515878

Query  101      LKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK  140
                LKP+L++LGV L AVVKE+VG EI+DFRPHFAG+I+LDEK
Sbjct  9515877  LKPELEKLGVHLVAVVKEDVGAEIEDFRPHFAGDIYLDEK  9515758


 Score = 87.4 bits (215),  Expect(2) = 7e-22, Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%), Gaps = 0/43 (0%)
 Frame = -1

Query  142      AFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL  184
                 FYGP QRKMGGLGF+RLGVWQNF+RAWR+GYQGNMNGEGFIL
Sbjct  9515134  VFYGPLQRKMGGLGFLRLGVWQNFIRAWRSGYQGNMNGEGFIL  9515006


 Score = 37.7 bits (86),  Expect(2) = 7e-22, Method: Composition-based stats.
 Identities = 17/25 (68%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
 Frame = -2

Query  198      LLEHREKEFGDKVSLESVLEAAKKV  222
                LLEH EKEFG+KV +  VLEA KK+
Sbjct  9514887  LLEHHEKEFGNKVQIADVLEAVKKI  9514813


 Score = 63.9 bits (154),  Expect(3) = 2e-21, Method: Compositional matrix adjust.
 Identities = 27/51 (53%), Positives = 40/51 (78%), Gaps = 0/51 (0%)
 Frame = -3

Query  94       EASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEKQAFY  144
                EA+EL+SLK QL +L VPL+AVVKEN+G E+  F+ +F G++++D+K   Y
Sbjct  9520832  EAAELTSLKSQLQDLEVPLFAVVKENIGKELDCFKKYFTGKVYVDQKVCIY  9520680


 Score = 49.3 bits (116),  Expect(3) = 2e-21, Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 0/42 (0%)
 Frame = -2

Query  143      FYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFIL  184
                FYGP++R M    F+R+GVW+N  RA+R G++GN+ GEG +L
Sbjct  9520593  FYGPKERWMFLSMFLRIGVWRNLWRAYRRGFRGNLRGEGLVL  9520468


 Score = 30.0 bits (66),  Expect(3) = 2e-21, Method: Compositional matrix adjust.
 Identities = 16/26 (62%), Positives = 22/26 (85%), Gaps = 0/26 (0%)
 Frame = -2

Query  68       KAKALWEKSGAVIMAVRRPGXFLCRE  93
                +A+ LW+K+GAV++ VRRPG  LCRE
Sbjct  9521013  RAQTLWDKTGAVVVVVRRPG*LLCRE  9520936


>ML171007.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold4, whole genome shotgun sequence
Length=16548284

 Score = 82.0 bits (201),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 46/48 (96%), Gaps = 0/48 (0%)
 Frame = +1

Query  93       EEASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK  140
                +EA+ELSSLKP+L+ELGVPLYAVVKE+VGTE+Q+FR +F GEIFLDEK
Sbjct  3145285  QEAAELSSLKPELEELGVPLYAVVKEDVGTEVQNFRQYFKGEIFLDEK  3145428


 Score = 70.9 bits (172),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (58%), Gaps = 35/121 (29%)
 Frame = +2

Query  137      LDEKQAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFILggvfvmgs----  192
                L  ++ FYGP++RKMG L F+R+GVW N +RA+R G+ GN+ GEGF+LGGVFV+G     
Sbjct  3145568  LALQRRFYGPRERKMGLLAFLRVGVWMNGLRAFRKGFMGNVLGEGFVLGGVFVIGRGQQV  3145747

Query  193      -------------------------------ggqgvLLEHREKEFGDKVSLESVLEAAKK  221
                                                 QG+LLEHRE EFGDKV+ E+V+ AA++
Sbjct  3145748  KPPTVKLCHSFIIKCR*YPALFYFFFLFIIILSQGILLEHREIEFGDKVNTEAVIRAARR  3145927

Query  222      V  222
                +
Sbjct  3145928  I  3145930


 Score = 58.5 bits (140),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 26/34 (76%), Positives = 30/34 (88%), Gaps = 0/34 (0%)
 Frame = +1

Query  63       DERSLKAKALWEKSGAVIMAVRRPGXFLCREEAS  96
                D R+LKA++LWE+SGAVIMAVRRPG FLCRE  S
Sbjct  3144436  DTRTLKARSLWERSGAVIMAVRRPG*FLCREVMS  3144537



Lambda      K        H        a         alpha
   0.319    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21518371848


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40