TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000649_2.0 # Protein # Selenoprotein T1 (SELENOT1) # Zebrafish

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171018.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  58.2    7e-17
ML173036.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  59.3    2e-09
SAUM01031467.1  Anarrhichthys ocellatus isolate YVR2014 contig867...  54.7    7e-08
ML172069.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  42.7    0.001


>ML171018.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold15, whole genome shotgun sequence
Length=9088374

 Score = 58.2 bits (139),  Expect(2) = 7e-17, Method: Compositional matrix adjust.
 Identities = 27/30 (90%), Positives = 28/30 (93%), Gaps = 0/30 (0%)
 Frame = +2

Query  126      KIYACMMVFFFSNMIENQCMSTGAFEITLN  155
                +IYACMMVFF SNMIENQ MSTGAFEITLN
Sbjct  4062056  QIYACMMVFFLSNMIENQLMSTGAFEITLN  4062145


 Score = 49.3 bits (116),  Expect(2) = 7e-17, Method: Compositional matrix adjust.
 Identities = 22/24 (92%), Positives = 23/24 (96%), Gaps = 0/24 (0%)
 Frame = +1

Query  155      NDVPVWSKLESGHLPSMQQLVQIL  178
                 DVPVWSK+ESGHLPSMQQLVQIL
Sbjct  4062253  TDVPVWSKIESGHLPSMQQLVQIL  4062324


 Score = 76.3 bits (186),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 34/37 (92%), Positives = 36/37 (97%), Gaps = 0/37 (0%)
 Frame = +2

Query  48       VSXGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYR  84
                +S GYKRVFEEYTQALYQRYPDIRIEGENYLP+PLYR
Sbjct  4059443  IS*GYKRVFEEYTQALYQRYPDIRIEGENYLPVPLYR  4059553


 Score = 59.7 bits (143),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +2

Query  84       RHIASFLSMFKllligviilgKDPFALCGMQAPGIWVWSQENKIYACMMVFFFSNMIENQ  143
                RH ASFLS+FKLL+IG+II+G+DPFAL GMQAPG+W W Q NK+   + V     + E+ 
Sbjct  4061165  RHFASFLSVFKLLVIGLIIIGRDPFALIGMQAPGLWEWGQGNKVRFTIRVIKDQIVWESI  4061344

Query  144      CM-STGAFEITLNDVPVWSK  162
                C     A ++T N    W K
Sbjct  4061345  CF*QVNATDVTRNLYKKWRK  4061404


 Score = 56.6 bits (135),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 35/45 (78%), Gaps = 2/45 (4%)
 Frame = +3

Query  4        MRWLPFSALLLWA--LCLHSASADNNGVKKMKMQFATGPLLKFQI  46
                M+WL FS L+L A  LC  ++   ++GVKKMKMQFATGPLLKFQI
Sbjct  4058472  MKWLRFSLLVLGAFSLCCATSGDSSSGVKKMKMQFATGPLLKFQI  4058606


>ML173036.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold6629, whole genome shotgun sequence
Length=2903

 Score = 59.3 bits (142),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 37/104 (36%), Positives = 53/104 (51%), Gaps = 28/104 (27%)
 Frame = +3

Query  80    LPLYRHIASFLSMFKllligviilgKDPFALCGMQAPGIWVWSQENK-------------  126
             L + R + + +S  KLL I +I+ G++PF L G+  P  W WSQ+NK             
Sbjct  1056  LSVLRCVGNLVSYLKLLSILLIVSGQNPFVLLGLDTPRAWNWSQDNKVHVTMATDDSTGY  1235

Query  127   ---------------IYACMMVFFFSNMIENQCMSTGAFEITLN  155
                            I++C+M FF  NM+E   +STGAFE+TLN
Sbjct  1236  HGNGFNPVTVFVVCQIFSCLMAFFLCNMMETHFLSTGAFEVTLN  1367


>SAUM01031467.1 Anarrhichthys ocellatus isolate YVR2014 contig8672_0, whole genome 
shotgun sequence
Length=1647

 Score = 54.7 bits (130),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (67%), Gaps = 0/51 (0%)
 Frame = -2

Query  34   MQFATGPLLKFQICVSXGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYR  84
            + + TG    +   +S GY +VF+EY++A+ Q YPDIRIEGENY P P  R
Sbjct  254  LAYLTGVSSLYVFSIS*GYNKVFQEYSRAISQLYPDIRIEGENYPPTPFNR  102


>ML172069.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold2138, whole genome shotgun sequence
Length=8541

 Score = 42.7 bits (99),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 26/31 (84%), Gaps = 0/31 (0%)
 Frame = +3

Query  148   GAFEITLNDVPVWSKLESGHLPSMQQLVQIL  178
             G F   L+DVPVWSKL+SG++P++Q++ QIL
Sbjct  1875  GCFLSALSDVPVWSKLQSGYVPNIQEIFQIL  1967



Lambda      K        H        a         alpha
   0.326    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 13197337140


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40