TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000648_2.0 # Protein # Selenoprotein S (SELENOS) # Zebrafish

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171169.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  50.8    7e-13


>ML171169.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold166, whole genome shotgun sequence
Length=316150

 Score = 50.8 bits (120),  Expect(2) = 7e-13, Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 28/29 (97%), Gaps = 0/29 (0%)
 Frame = -1

Query  110    EEEKRRQKIEMWDSMQEGKSYKGSAKVAQ  138
              EEEKRRQKIE+WDSMQ+G+SYKG+AK +Q
Sbjct  41425  EEEKRRQKIEIWDSMQQGRSYKGTAKPSQ  41339


 Score = 43.5 bits (101),  Expect(2) = 7e-13, Method: Compositional matrix adjust.
 Identities = 22/38 (58%), Positives = 29/38 (76%), Gaps = 0/38 (0%)
 Frame = -3

Query  73     DVGSVVRRQEALEASRRRMQEEQDARAAEFREKQRMLE  110
              D   V +RQEA+EA+R +MQEE DA+A  FREKQR ++
Sbjct  41615  DAALVAKRQEAMEAARIKMQEELDAKADIFREKQRQVQ  41502


 Score = 41.6 bits (96),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 0/30 (0%)
 Frame = -1

Query  26     PSVTAFMSEYGWYLLFGCVGVYLLIQHLRK  55
              P+V   +S+YGWYLL   V VYLLIQHL K
Sbjct  43351  PTVGELLSQYGWYLLAVTVLVYLLIQHLSK  43262



Lambda      K        H        a         alpha
   0.312    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15429910640


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40