TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000643_2.0 # Protein # Selenoprotein P (SELENOP) # Zebrafish

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171020.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  68.9    3e-11
ML171018.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  46.2    5e-04


>ML171020.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold17, whole genome shotgun sequence
Length=8097053

 Score = 68.9 bits (167),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (86%), Gaps = 0/42 (0%)
 Frame = +3

Query  27       RCKLPPEWKVGDVEPMKNALGQVTVVAYLQASXLFCLEQASK  68
                RC+LPP W++G+VEPMK  +GQVTVVA LQAS LFCL QAS+
Sbjct  3354882  RCQLPPSWRIGEVEPMKGTMGQVTVVALLQAS*LFCLVQASR  3355007


 Score = 65.1 bits (157),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 48/127 (38%), Positives = 67/127 (53%), Gaps = 23/127 (18%)
 Frame = +2

Query  67       SKLNDLLLKLEKQGYPNIAYMVVNNREERSqrlhhllqer-llNITLYAQDLSQPDAWQA  125
                S+++ L   +E QG  N++YMVVN + E + RLH +L +R  +NITLY QD  QPD WQA
Sbjct  3355340  SRMDGLRQTVEGQGLKNVSYMVVNQQGEPALRLHTMLAQRLSVNITLYKQDEQQPDVWQA  3355519

Query  126      VNAEKDDILVYD----------RCGRLTYHLSLP---YTILIH-------PHVEEAIKHT  165
                ++  KDD LVYD          R     + L +P   +  L H       PH+   + H 
Sbjct  3355520  LSGGKDDFLVYDRFVARGGSKSRATAFIFSLQVPHHAFLSLFHQVWPSHPPHLPSLLHHR  3355699

Query  166      YCDRICG  172
                   R+CG
Sbjct  3355700  --ARLCG  3355714


 Score = 55.8 bits (133),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (2%)
 Frame = +3

Query  135      VYDRCGRLTYHLSLPYTILIHPHVEEAIKHTYCDRICGECSLESSAQLEECK  186
                 + RCGRLT+H+SLPY+I+   +VE AIK  YC R CG+C+ E      +CK
Sbjct  3355641  FFIRCGRLTHHISLPYSIIGQGYVEGAIKDAYCKRTCGDCAHEVQTT-HDCK  3355793


 Score = 42.7 bits (99),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 34/56 (61%), Gaps = 1/56 (2%)
 Frame = +1

Query  285      SPVASXCXHXRQLFGGEGNGRVAGLXHCDEPLPASXPXQGLK-EQDNHIKETXQXR  339
                SP AS C H R+LFG  G+ +  GL HCDE LPAS    GL  +  N ++ET Q R
Sbjct  3356266  SPKAS*C*H*RRLFGNAGSEQPLGL*HCDEALPAS*Q*HGLTGDATNSVRET*Q*R  3356433


>ML171018.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold15, whole genome shotgun sequence
Length=9088374

 Score = 46.2 bits (108),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = -3

Query  75      KLEKQGYPNIAYMVVNNREERSqrlhhllqerl-lNITLYAQDLSQPDAWQAVNAEKDDI  133
               KL+     ++++MVVN RE  S+ ++  L+ R  L + +Y Q   Q D W+A++ +KDD 
Sbjct  453043  KLDHSNLRDVSFMVVNEREAHSRAMYWELKRRAPLGVPVYQQAPLQNDVWEALDGDKDDF  452864

Query  134     LVYDRCGRLTYHLS  147
               LVYDR G    H S
Sbjct  452863  LVYDR*GLFKTHGS  452822


 Score = 46.2 bits (108),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (2%)
 Frame = -2

Query  15      VGCSAESETEGAR-CKLPPEWKVGDVEPMKNALGQVTVVAYLQASXLFCLEQASK  68
               V    E + + +R CK  P W +    PM+  LG V VVA L+AS  FCL QASK
Sbjct  453884  VSLIVEGDNDASRICKPAPHWTIKGRAPMQELLGNVVVVALLKAS*QFCLTQASK  453720


 Score = 45.8 bits (107),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (72%), Gaps = 0/39 (0%)
 Frame = -2

Query  134     LVYDRCGRLTYHLSLPYTILIHPHVEEAIKHTYCDRICG  172
               L + RCG+LT+H+ LP++ L + +VE AI+ TY + IC 
Sbjct  451886  LCFSRCGQLTFHIVLPFSFLHNVYVEAAIRATYLNNICN  451770



Lambda      K        H        a         alpha
   0.313    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 49719959940


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40