TBLASTN 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 10,816 sequences; 612,774,492 total letters Query= SPP00000640_2.0 # Protein # Selenoprotein O1 (SELENOO1) # Zebrafish Length=692 Score E Sequences producing significant alignments: (Bits) Value ML171005.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 276 1e-77 ML171013.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 71.2 3e-11 >ML171005.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Length=18420086 Score = 276 bits (705), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/185 (76%), Positives = 156/185 (84%), Gaps = 0/185 (0%) Frame = -3 Query 1 MASVGSRLTRFYISRPGVIARRFLAHAGMDDMGVslsrsslerleFDNVALKKLPLDPST 60 MA +G RL I PGV A R L GM DMG+++SRS LE+L+FDNVALKKLP+D S Sbjct 16652697 MAYLGPRLAPSRIFVPGVSAFRLLGTVGMADMGLAMSRSPLEQLDFDNVALKKLPMDSSE 16652518 Query 61 EPGVRQVRGSCFSRVQPTPLKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKVMP 120 EPGVRQV+G+CFSRV+P PL P FVAVS ALALLGL EEV+ DPLGPEYLSGS+VMP Sbjct 16652517 EPGVRQVKGACFSRVKPQPLTKPRFVAVSHEALALLGLSGEEVMNDPLGPEYLSGSRVMP 16652338 Query 121 GSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAGL 180 GS+PAAHCYCGHQFGQFAGQLGDGAACYLGEVK PAGQ P+LLRENP+GRWEIQVKGAGL Sbjct 16652337 GSQPAAHCYCGHQFGQFAGQLGDGAACYLGEVKVPAGQDPDLLRENPSGRWEIQVKGAGL 16652158 Query 181 TPYSR 185 TPYSR Sbjct 16652157 TPYSR 16652143 Score = 244 bits (622), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 120/185 (65%), Positives = 130/185 (70%), Gaps = 48/185 (26%) Frame = -2 Query 313 VTVRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPFGFMDR---------------- 356 V +RTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGP+GFMDR Sbjct 16651072 VMLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRSDICRVF*PIGLIEQL 16650893 Query 357 --------------------------------FDPDFICNASDNSGRYSYQAQPAICRWN 384 FDPDFICNASDNSGRYSYQAQPAICRWN Sbjct 16650892 LCCYLIFIIIQE*VEMIVKQ*SQDPTFLIPLRFDPDFICNASDNSGRYSYQAQPAICRWN 16650713 Query 385 LARLAEALEPDLPPDRAEQVLDEYLPLYNDFYLSNMRKKLGLLRKEEPEDEMLITELMQT 444 L +LAEAL P+LPPDRAE V+DEYL LYN FYL +MRKKLGLL+K+EPEDE+LITEL+QT Sbjct 16650712 LVKLAEALAPELPPDRAEAVMDEYLDLYNGFYLESMRKKLGLLKKDEPEDELLITELLQT 16650533 Query 445 MHNTG 449 MHNTG Sbjct 16650532 MHNTG 16650518 Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 56/71 (79%), Positives = 64/71 (90%), Gaps = 0/71 (0%) Frame = -1 Query 185 RQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVV 244 RQADGRKVLRSSIREFLCSE ++ LGVPTTRAGSVVTSDSRV+RD++Y NP ERCSVV Sbjct 16651946 RQADGRKVLRSSIREFLCSEVMYFLGVPTTRAGSVVTSDSRVIRDVYYSRNPLYERCSVV 16651767 Query 245 LRIAPSFIRFG 255 +RIAP+F+R G Sbjct 16651766 VRIAPTFLR*G 16651734 Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 52/96 (54%), Positives = 65/96 (68%), Gaps = 3/96 (3%) Frame = -2 Query 221 TSDSRVMRDIFYDGNPRMERC---SVVLRIAPSFIRFGSFEIFKRADEFTGRQGPSYGHD 277 + + R+ + Y G RC S + + S RFGSFEIFKRADE TG QGPSYG D Sbjct 16651744 SGEGRLYPTVIYRGRVSSSRCTCDSCFVSVVRSLCRFGSFEIFKRADEHTGCQGPSYGRD 16651565 Query 278 ELRTQMLEYVIENFYPEIHRNYPDLTERNTAFFKEV 313 E+R QM++YVIE FYP+I RN+P+ ERN AFF+EV Sbjct 16651564 EIRGQMMDYVIETFYPDIQRNHPERVERNVAFFREV 16651457 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 43/67 (64%), Positives = 57/67 (85%), Gaps = 0/67 (0%) Frame = -1 Query 501 SMDPRELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWS 560 S D ELAML+SMAQSNPALFQMISDR +++RQL+RLS+LK+LM+T++E+L+ + E WS Sbjct 16649543 SADDSELAMLLSMAQSNPALFQMISDRTSIARQLDRLSKLKDLMETSQEELKTQQAEEWS 16649364 Query 561 DWIQKYR 567 WI +YR Sbjct 16649363 RWITRYR 16649343 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/55 (73%), Positives = 45/55 (82%), Gaps = 0/55 (0%) Frame = -3 Query 566 YRQRLARECESGVDVKDVQTERVRVMNNNNPHVVLRNYIAQNAIAAAENGDFSEV 620 +R+RLARE E DV+ Q ERVRVM++ NP VVLRNYIAQNAI AAENGDFSEV Sbjct 16649076 HRKRLARELEGQSDVRAAQEERVRVMDSTNPRVVLRNYIAQNAIEAAENGDFSEV 16648912 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/57 (74%), Positives = 51/57 (89%), Gaps = 0/57 (0%) Frame = -3 Query 449 GADFTNTFRSLSQISCPTQEEAEDESETIKQATELLLHQSASLEELKAANRPSMDPR 505 G+DFTNTFRSLSQISCPT+ E+E E E +++AT+LLL Q ASLEELKAAN+P+MDPR Sbjct 16650336 GSDFTNTFRSLSQISCPTEGESEGEEELVRKATDLLLEQRASLEELKAANKPTMDPR 16650166 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/78 (56%), Positives = 53/78 (68%), Gaps = 4/78 (5%) Frame = -3 Query 619 EVQRVLKVLEKPFSVQEGLEQPGWM---GRGGAAIPGERDETEEEGSNSSGAGA-RGLVP 674 +VQRVLKVLEKPFS+Q GLE P W+ G G A GERDE E++ ++ R VP Sbjct 16648704 QVQRVLKVLEKPFSLQPGLELPVWVGGGGGGKATKQGERDEGEDQQQEAASTSTDRNPVP 16648525 Query 675 YDSKPPVWANEICVTXSS 692 YDS+PP WA+EICV SS Sbjct 16648524 YDSRPPAWAHEICVA*SS 16648471 >ML171013.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold10, whole genome shotgun sequence Length=10986315 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 60/156 (38%), Gaps = 67/156 (43%) Frame = +3 Query 308 AFFKEVTVRTARLVAQWQCVGFCHG----------------------------------- 332 F+ V TA L+AQW +GF HG Sbjct 8441682 VFYSTVVNETAHLIAQWMSIGFAHGENLLWLIVLPYSLYQHLLIHIYVSSHSFIILRLIT 8441861 Query 333 --VLNTDNMSILGLTLDYGPFGFMDRFDP------------------------------D 360 V NTDN S+L +T+DYGPFGFM+ + P D Sbjct 8441862 TGVCNTDNFSLLSITIDYGPFGFMESYSPSVYDDARLRFFNNKRMPRSCQTSNTCLIFAD 8442041 Query 361 FICNASDNSGRYSYQAQPAICRWNLARLAEALEPDL 396 F+ N SD+ GRYS AQ + +NL +L AL P L Sbjct 8442042 FVPNTSDDEGRYSIGAQADVGLFNLQKLLMALSPVL 8442149 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/33 (70%), Positives = 27/33 (82%), Gaps = 0/33 (0%) Frame = +1 Query 184 SRQADGRKVLRSSIREFLCSEAVFALGVPTTRA 216 SR DGR V+RSS+REFLCSEA+ LG PT+RA Sbjct 8440873 SRSGDGRAVIRSSVREFLCSEAMHFLGAPTSRA 8440971 Lambda K H a alpha 0.318 0.134 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 114420775824 Database: genome.fa Posted date: Oct 26, 2019 7:49 PM Number of letters in database: 612,774,492 Number of sequences in database: 10,816 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40