TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000638_2.0 # Protein # Selenoprotein M (SELENOM) # Zebrafish

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171020.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  75.9    9e-16
ML171012.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  38.5    0.008


>ML171020.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold17, whole genome shotgun sequence
Length=8097053

 Score = 75.9 bits (185),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = -1

Query  81       RIPLSEMTRAEINKLLAELGFYKKDHPEDQVPEEFRFSPAKDSPFE  126
                RI LS+M+R+EIN+LL ELGFYKK  PE +VPEEFRFSPAKDSPF+
Sbjct  6803273  RIALSDMSRSEINELLGELGFYKKTDPEAEVPEEFRFSPAKDSPFK  6803136


 Score = 61.6 bits (148),  Expect(2) = 5e-11, Method: Composition-based stats.
 Identities = 27/28 (96%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = -2

Query  53       LYHNLVMKHIPGADPELVLLNHYYEELD  80
                L HNLVMKHIPGADPELVLLNHYYEELD
Sbjct  6803965  LSHNLVMKHIPGADPELVLLNHYYEELD  6803882


 Score = 24.6 bits (52),  Expect(2) = 5e-11, Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 0/20 (0%)
 Frame = -3

Query  42       EVKAFVTQDIPLYHNLVMKH  61
                +VKAFV QDIPL + L   H
Sbjct  6804117  QVKAFVVQDIPL*YPLAHVH  6804058


>ML171012.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold9, whole genome shotgun sequence
Length=11052619

 Score = 38.5 bits (88),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 17/40 (43%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
 Frame = +2

Query  82        IPLSEMTRAEINKLLAELGFYKKDHPEDQVPEEFRFSPAK  121
                 +P+ +M   EI+ LL  LGFYK+    ++VPEEF+  P +
Sbjct  10099646  VPVEKMKAEEISSLLDSLGFYKRSQKGEEVPEEFQHFPLR  10099765



Lambda      K        H        a         alpha
   0.320    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5078873300


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40