TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000637_2.0 # Protein # Selenoprotein L (SELENOL) # Zebrafish

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171010.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  54.3    2e-10
ML171028.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  54.3    8e-07


>ML171010.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold7, whole genome shotgun sequence
Length=13290546

 Score = 54.3 bits (129),  Expect(2) = 2e-10, Method: Compositional matrix adjust.
 Identities = 23/40 (58%), Positives = 32/40 (80%), Gaps = 0/40 (0%)
 Frame = -3

Query  177       LEAQSLRVLVVSYGSLEGATFWLEQTGFEFDMLLDTERTV  216
                 L+A S+ V+VVS+G  EGA+ WL++TG ++DMLLD ER V
Sbjct  11113342  LDAHSIEVVVVSFGCQEGASHWLQETGCQYDMLLDPERKV  11113223


 Score = 32.7 bits (73),  Expect(2) = 2e-10, Method: Compositional matrix adjust.
 Identities = 16/49 (33%), Positives = 25/49 (51%), Gaps = 0/49 (0%)
 Frame = -2

Query  216       VYKMFGLGSSMSKVMKFKLMFHYSEIMAMNRTLPEMPPQFIEDLFQMGG  264
                 +Y  FGL +SM K + F  M   +E +  N   P+  P   +D+FQ+  
Sbjct  11113139  MYAAFGLRASMKKALNFSDMLLCAEYVVDNMEFPKGLPSIQDDMFQVNN  11112993


 Score = 50.1 bits (118),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 30/37 (81%), Gaps = 0/37 (0%)
 Frame = -2

Query  259       LFQMGGDFVLEQDGKVIFSYRCKSPVDRPSATQILAT  295
                 +F +GGDFVL++ G+V+FS+ C+SP+DRPS   +L+ 
Sbjct  11112677  MF*VGGDFVLDEHGRVLFSHCCQSPIDRPSVEDLLSA  11112567


>ML171028.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold25, whole genome shotgun sequence
Length=6454106

 Score = 54.3 bits (129),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 0/50 (0%)
 Frame = +3

Query  216      VYKMFGLGSSMSKVMKFKLMFHYSEIMAMNRTLPEMPPQFIEDLFQMGGD  265
                VY+ FGLGSS +KVM+F  +  YSE  A++R  P + P+ +ED++Q+  D
Sbjct  3543699  VYRSFGLGSSYAKVMRFGCLLQYSEYGAVDRDFPVVAPRLLEDIYQVHMD  3543848


 Score = 54.3 bits (129),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 28/35 (80%), Gaps = 0/35 (0%)
 Frame = +2

Query  182      LRVLVVSYGSLEGATFWLEQTGFEFDMLLDTERTV  216
                +RVLVVS+G LEGA  WLEQTG  FDMLLD +R V
Sbjct  3543101  VRVLVVSFGGLEGAQVWLEQTGCTFDMLLDPQRKV  3543205


 Score = 45.1 bits (105),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 19/34 (56%), Positives = 26/34 (76%), Gaps = 0/34 (0%)
 Frame = +3

Query  260      FQMGGDFVLEQDGKVIFSYRCKSPVDRPSATQIL  293
                F MGGDF+L++ GKV+ S+  KSP+DRP+   IL
Sbjct  3544320  F*MGGDFLLDEAGKVLLSHPSKSPMDRPTVKAIL  3544421


 Score = 43.5 bits (101),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (78%), Gaps = 0/40 (0%)
 Frame = +1

Query  136      ENVSLGQYLGKGENlllvllRHFGXLPXRDHLTELKNSKM  175
                 +V+LGQYLGKG+  LLVL+RHFG LP RDH  EL+  ++
Sbjct  3542173  RSVTLGQYLGKGQKPLLVLIRHFG*LP*RDHTAELEAHQV  3542292



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 36938764408


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40