TBLASTN 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 10,816 sequences; 612,774,492 total letters Query= SPP00000636_2.0 # Protein # Selenoprotein J1 (SELENOJ1) # Zebrafish Length=342 Score E Sequences producing significant alignments: (Bits) Value ML171018.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 134 5e-44 ML171116.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 123 1e-29 >ML171018.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold15, whole genome shotgun sequence Length=9088374 Score = 134 bits (336), Expect(2) = 5e-44, Method: Compositional matrix adjust. Identities = 72/118 (61%), Positives = 78/118 (66%), Gaps = 29/118 (25%) Frame = +1 Query 109 PYRDKGAPRPQLPIEGPWRHASLKGFIKNVDAGKEETG---------------------- 146 P KG PRPQLPI+GPWR SLK F+KNVDAGKEETG Sbjct 1606414 PCLQKG-PRPQLPIQGPWRQGSLKSFLKNVDAGKEETGRSVVIL*Q*LKT*RRETALN*C 1606590 Query 147 ------CETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAAR 198 CE D QIDG+ KLAP+VA YAGKP+MLEKVE+AVRVTQNND CVAETLAAAR Sbjct 1606591 VVFPAGCENDCQIDGIAKLAPVVAFYAGKPDMLEKVEQAVRVTQNNDACVAETLAAAR 1606764 Score = 66.6 bits (161), Expect(2) = 5e-44, Method: Compositional matrix adjust. Identities = 28/34 (82%), Positives = 30/34 (88%), Gaps = 0/34 (0%) Frame = +3 Query 82 GLNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGA 115 GLNV+D KQRT FFGPGSEYDTPVNDPYR+KG Sbjct 1606233 GLNVDDLKQRTVTFFGPGSEYDTPVNDPYREKGG 1606334 Score = 93.2 bits (230), Expect(2) = 3e-24, Method: Compositional matrix adjust. Identities = 43/48 (90%), Positives = 45/48 (94%), Gaps = 0/48 (0%) Frame = +1 Query 263 GLPGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV 310 GLPGAFQAAL+GVLTA YEQAVRDTMSCGGCTCSR SFIGAC+GAQV Sbjct 1607656 GLPGAFQAALYGVLTAKHYEQAVRDTMSCGGCTCSRGSFIGACLGAQV 1607799 Score = 40.8 bits (94), Expect(2) = 3e-24, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 25/34 (74%), Gaps = 0/34 (0%) Frame = +2 Query 308 AQVGLEGIPASWKSKTLRCNTLLDLSRKVVALQQ 341 +Q+G E IP+SW SKTLR +++L+ +RK+ Q Sbjct 1607888 SQIGFEEIPSSWTSKTLRYDSVLEHARKITKQHQ 1607989 Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 48/59 (81%), Positives = 51/59 (86%), Gaps = 0/59 (0%) Frame = +2 Query 24 QPLHWVYDLSKLSVLLSQSPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QPLHWVYDL KL +L+Q P PEF ESANPFYRR TGQQSCYGDQAF+LLESLSECGG Sbjct 1605842 QPLHWVYDLQKLQGILAQHPNPEFCSESANPFYRRQTGQQSCYGDQAFVLLESLSECGG 1606018 Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/40 (85%), Positives = 37/40 (93%), Gaps = 0/40 (0%) Frame = +1 Query 198 RFLEHFILNGPDPKALDAVLKQLSDPERKNPQELDKAVIG 237 RFLEH+ILNGPDPKALD+VL QLSDP RK PQ+LDKAVIG Sbjct 1607098 RFLEHYILNGPDPKALDSVLDQLSDPNRKQPQDLDKAVIG 1607217 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/28 (68%), Positives = 23/28 (82%), Gaps = 0/28 (0%) Frame = +2 Query 237 GHIHQVKDNLNKKPKELIPAVFPNTXGL 264 GHIH+VK NL+K P+ELIP VFPN G+ Sbjct 1607426 GHIHEVKKNLSKTPQELIPTVFPNA*GI 1607509 >ML171116.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold113, whole genome shotgun sequence Length=868581 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/113 (58%), Positives = 74/113 (65%), Gaps = 30/113 (27%) Frame = +3 Query 116 PRPQLPIEGPWRHASLKGFIKNVDAGKEETG----------------------------- 146 P+ LPI+GPWR+ASLK FI+NVDAGKEETG Sbjct 560973 PKAILPIDGPWRNASLKAFIRNVDAGKEETGKDHRSEVREDIPWHFFFGGINLCLCICF* 561152 Query 147 -CETDTQIDGVTKLAPIVACYAGKPEMLEKVEEAVRVTQNNDLCVAETLAAAR 198 C+ D Q+DGVTKLAP+VA YAG PEMLEKVE A+RVTQNND+CVA TLAAAR Sbjct 561153 GCDVDCQMDGVTKLAPVVAMYAGHPEMLEKVERAMRVTQNNDMCVAVTLAAAR 561311 Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 40/60 (67%), Positives = 50/60 (83%), Gaps = 1/60 (2%) Frame = +1 Query 24 QPLHWVYDLSKLSVLLSQ-SPQPEFRPESANPFYRRNTGQQSCYGDQAFILLESLSECGG 82 QP+HW+YD +L +LS P PEFRP+SANPFY R TG+Q+CYGDQA++LLESLS+CGG Sbjct 559639 QPMHWIYDPDRLKEVLSDLEPCPEFRPQSANPFYSRTTGKQTCYGDQAYVLLESLSQCGG 559818 Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/88 (48%), Positives = 52/88 (59%), Gaps = 12/88 (14%) Frame = +2 Query 162 IVACYAGKPEMLEKVEEAVRVTQNNDLC------------VAETLAAARFLEHFILNGPD 209 + C AG E+ E EEA ++ + C RFLEHFILNGPD Sbjct 561281 VCGCDAGCSEVREGSEEADKLLVMHTSCRIMLT*VEGGLPFVCLFNIVRFLEHFILNGPD 561460 Query 210 PKALDAVLKQLSDPERKNPQELDKAVIG 237 P ALDAVL QL+DP+R+NPQELD+AV+G Sbjct 561461 PNALDAVLAQLNDPKRQNPQELDRAVVG 561544 Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 34/46 (74%), Positives = 37/46 (80%), Gaps = 0/46 (0%) Frame = +3 Query 265 PGAFQAALHGVLTASSYEQAVRDTMSCGGCTCSRSSFIGACIGAQV 310 PGAFQ ALHGVL ++AVRDTM CGGCT SR+SFIGAC GAQV Sbjct 562284 PGAFQGALHGVLKLKQLDEAVRDTMRCGGCTASRASFIGACFGAQV 562421 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 21/33 (64%), Positives = 25/33 (76%), Gaps = 0/33 (0%) Frame = +2 Query 83 LNVEDFKQRTYKFFGPGSEYDTPVNDPYRDKGA 115 +NVED +R YKFFGPG+ YD P+NDPY KG Sbjct 560303 VNVEDLNKRIYKFFGPGTVYDVPLNDPYMKKGG 560401 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/31 (65%), Positives = 23/31 (74%), Gaps = 0/31 (0%) Frame = +3 Query 237 GHIHQVKDNLNKKPKELIPAVFPNTXGLPGA 267 HIHQVKDNL K ++L+PAVF NT G PG Sbjct 561867 AHIHQVKDNLAKTSQQLVPAVFTNT*GKPGG 561959 Lambda K H a alpha 0.317 0.134 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44851823588 Database: genome.fa Posted date: Oct 26, 2019 7:49 PM Number of letters in database: 612,774,492 Number of sequences in database: 10,816 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40