TBLASTN 2.7.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 10,816 sequences; 612,774,492 total letters Query= SPP00000665_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Zebrafish Length=316 Score E Sequences producing significant alignments: (Bits) Value ML171060.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 55.8 5e-15 ML171132.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 74.7 2e-13 ML171038.1 Anarrhichthys ocellatus isolate YVR2014 unplaced geno... 52.8 3e-06 >ML171060.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Length=2671159 Score = 55.8 bits (133), Expect(3) = 5e-15, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 31/38 (82%), Gaps = 0/38 (0%) Frame = -3 Query 46 GSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFK 83 G+ GYCFVEM DEA+ +RC++++NGK +PG+NP F+ Sbjct 2144057 GALGYCFVEMTDEATAERCLRKINGKALPGANPVWVFR 2143944 Score = 42.7 bits (99), Expect(3) = 5e-15, Method: Compositional matrix adjust. Identities = 17/33 (52%), Positives = 25/33 (76%), Gaps = 0/33 (0%) Frame = -1 Query 13 LDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 L+ YMDE F+ ++FSTMGE V+II +++TG Sbjct 2144233 LEAYMDEKFVTRSFSTMGEQVINVRIIRNKMTG 2144135 Score = 23.9 bits (50), Expect(3) = 5e-15, Method: Compositional matrix adjust. Identities = 9/14 (64%), Positives = 12/14 (86%), Gaps = 0/14 (0%) Frame = -1 Query 79 PRKFKLNYATYGKR 92 P +FKLN AT+GK+ Sbjct 2143867 PTRFKLNRATFGKQ 2143826 Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/42 (60%), Positives = 33/42 (79%), Gaps = 0/42 (0%) Frame = -2 Query 99 FSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSR 140 +S+FVGDLT EVDD L++FF ++PSC+G KVV D GNS+ Sbjct 2142411 YSLFVGDLTPEVDDGMLYEFFYNRYPSCRGGKVVLDSMGNSK 2142286 Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 34/45 (76%), Gaps = 0/45 (0%) Frame = -3 Query 263 VEEDPSEDPNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTIT 307 +E + DP+P++DV E NR++ME SEELYD+L+ECHW P + T Sbjct 2138438 IERLCAADPSPELDVVEANRKFMELSEELYDALIECHWQPAELST 2138304 Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/41 (61%), Positives = 31/41 (76%), Gaps = 0/41 (0%) Frame = -3 Query 139 SRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179 RG GFV+F DE QK+ALE+ Q A GLG KP+R+S+A NK Sbjct 2140478 CRGCGFVQFPDERLQKRALEDCQGAVGLGSKPLRLSLAANK 2140356 >ML171132.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold129, whole genome shotgun sequence Length=652884 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/51 (75%), Positives = 40/51 (78%), Gaps = 1/51 (2%) Frame = -2 Query 93 PEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYG 143 P PEFSVFVGDL SEVDD+QLHQ F KK+ SCKGAKVVTD YG SR G Sbjct 630029 PSLRPEFSVFVGDLASEVDDFQLHQVF-KKYLSCKGAKVVTDQYGYSRYVG 629880 Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 33/36 (92%), Positives = 34/36 (94%), Gaps = 0/36 (0%) Frame = -1 Query 43 VTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNP 78 V GSAGYCFVE+ADEASVDRCVQRLNGKLVPGSNP Sbjct 631347 VCSGSAGYCFVELADEASVDRCVQRLNGKLVPGSNP 631240 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/33 (88%), Positives = 31/33 (94%), Gaps = 0/33 (0%) Frame = -1 Query 13 LDPYMDENFIKQAFSTMGETAFGVKIITHRVTG 45 LDPYMDENFIKQAFS MGE+ FGVKIITHR+TG Sbjct 631662 LDPYMDENFIKQAFSAMGESPFGVKIITHRITG 631564 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (2%) Frame = -2 Query 123 FPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179 + C GA+ + + RGYGFVKF +E EQKKA+EE Q LGGKP+R+SIAV K Sbjct 629549 YGVCVGAERMPNCGFTCRGYGFVKFGEEGEQKKAIEECQGTM-LGGKPLRLSIAVAK 629382 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 20/35 (57%), Positives = 28/35 (80%), Gaps = 0/35 (0%) Frame = -1 Query 270 DPNPQVDVEELNRQYMERSEELYDSLMECHWLPMD 304 +P P DVE+ N+ +M+RSEELYD++M CHW P+D Sbjct 625350 EPIPDCDVEQWNKDFMQRSEELYDAMMGCHWEPLD 625246 >ML171038.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold scaffold35, whole genome shotgun sequence Length=4934539 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (7%) Frame = -3 Query 49 GYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYAT-YGKRPEPGPEFSVFVGDLT 107 GY FVE E D ++ +N + G + ++N A+ + K + G ++F+G+L Sbjct 4437788 GYGFVEFLSEEDADYAIKIMNMIKLYG----KPIRVNKASAHNKNLDVGA--NIFIGNLD 4437627 Query 108 SEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGL 166 E+D+ L+ F + K++ DP GNS+GY F+ F+ + A+E N L Sbjct 4437626 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA-MNGQYL 4437450 Query 167 GGKPIRISIAVNKGNK 182 +PI +S A K +K Sbjct 4437449 CNRPITVSYAFKKDSK 4437402 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/66 (32%), Positives = 35/66 (53%), Gaps = 0/66 (0%) Frame = -3 Query 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65 ++++G+LDP +DE + FS G KI+ TG S GY F+ A + D + Sbjct 4437653 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 4437474 Query 66 QRLNGK 71 + +NG+ Sbjct 4437473 EAMNGQ 4437456 Lambda K H a alpha 0.315 0.133 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39780207824 Database: genome.fa Posted date: Oct 26, 2019 7:49 PM Number of letters in database: 612,774,492 Number of sequences in database: 10,816 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40