TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000627_2.0 # Protein # SECIS binding protein 2 (SBP2) #
Zebrafish

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171012.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  125     6e-30
ML171011.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  101     5e-22


>ML171012.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold9, whole genome shotgun sequence
Length=11052619

 Score = 125 bits (313),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 77/123 (63%), Gaps = 42/123 (34%)
 Frame = +1

Query  262      GGLDEALHNIIDTCRDQSVPFVFALSRKALGRCVNKAVPVSLVGIFNYDGA---------  312
                GGLDEAL+ IIDTCR+Q VPFVFALSRKALGRCV+KAVPVSLVGIFNYDGA         
Sbjct  9225634  GGLDEALYTIIDTCREQGVPFVFALSRKALGRCVSKAVPVSLVGIFNYDGAQVGNMFSSN  9225813

Query  313      ---------------------------------QDHYHKMIELSAEARKSYEVMIANLDE  339
                                                 QD YHKMIELS++AR++YEVM+++L++
Sbjct  9225814  AY*SLTKQLF*T*EFVFLINIFQKR*EVCLSYPQDFYHKMIELSSDARRAYEVMVSSLEQ  9225993

Query  340      EGE  342
                 G+
Sbjct  9225994  TGQ  9226002


 Score = 115 bits (289),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 76/83 (92%), Gaps = 1/83 (1%)
 Frame = +3

Query  189      YCNQVLSKDVDECVSNLLKELVRFQDRLYQKDPMKARMKRRLVMGLREvlkhlklkkvkc  248
                YC+Q+LSKDVDECV+ LLKELVRFQDRLYQKDPMKARMKRR+VMGLREVLKHLKL+KVKC
Sbjct  9224868  YCSQMLSKDVDECVTALLKELVRFQDRLYQKDPMKARMKRRIVMGLREVLKHLKLRKVKC  9225047

Query  249      vIISPNCERIQSKGGLDE-ALHN  270
                V+ISPNCERIQSKG +     HN
Sbjct  9225048  VVISPNCERIQSKGTVSL*EFHN  9225116


 Score = 100 bits (249),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 90/231 (39%), Positives = 105/231 (45%), Gaps = 85/231 (37%)
 Frame = +3

Query  42       LTVGGALPVVHKEPSVQKK-QWQQEKTPHNPLDSTCPSVKKGKQREVPKAKKPTPLKR--  98
                  VGG LP V K+P VQKK  WQQ+K  HNPLDST P VKKGKQREVPKAKKPTPLK+  
Sbjct  9224004  FAVGGGLPAVQKQPLVQKKLPWQQDKIAHNPLDSTSPLVKKGKQREVPKAKKPTPLKKAC  9224183

Query  99       --------------------------------VILREREERKQNRLLEER-----DPSRV  121
                                                VIL+EREERKQ RLLEER     +  + 
Sbjct  9224184  PPTYSGTNTDALHFLRMYFQQWSLY*FISVSQVILKEREERKQKRLLEERGLLPENEFKP  9224363

Query  122      ATEA------GEKETNDNAEDIGVKD----SEI-----------------EQPASPSDDK  154
                A +A       + ETN   +   VK      EI                 ++  SP+++ 
Sbjct  9224364  AIDAEEEEEEEQCETNATGQIKHVKQ*NTFEEIFDYSEYLICYFCASVASDEVGSPTEE-  9224540

Query  155      LDDGLSENPTLQT-----------EIPNSNPISKV------PKIHSRKFRD  188
                LDD    N T QT           EI      S V      PKIHSRKFR+
Sbjct  9224541  LDDKSELNDTKQTVKEGDEEADKDEIVEEQTTSPVPCPANRPKIHSRKFRE  9224693


>ML171011.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold8, whole genome shotgun sequence
Length=11414287

 Score = 101 bits (252),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 69/77 (90%), Gaps = 0/77 (0%)
 Frame = +3

Query  186      FRDYCNQVLSKDVDECVSNLLKELVRFQDRLYQKDPMKARMKRRLVMGLREvlkhlklkk  245
                F  YCNQVLSK++DE V+ LL+ELVRFQ+R+YQKDP KA+ KRRLVMGLREV KH+KL K
Sbjct  7534821  FCRYCNQVLSKEIDESVTMLLQELVRFQERVYQKDPTKAKSKRRLVMGLREVTKHMKLNK  7535000

Query  246      vkcvIISPNCERIQSKG  262
                +KCVIISPNCE+IQ+KG
Sbjct  7535001  IKCVIISPNCEKIQAKG  7535051


 Score = 92.4 bits (228),  Expect(2) = 1e-19, Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 47/56 (84%), Gaps = 1/56 (2%)
 Frame = +2

Query  262      GGLDEALHNIIDTCRDQSVPFVFALSRKALGRCVNKAVPVSLVGIFNYDGAQ-DHY  316
                GGLDEAL+N+I   RDQ +PFVFAL RKALGRCVNK VPVS+VGIFNY GA+  H+
Sbjct  7535252  GGLDEALYNVIAMARDQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYSGAEVSHF  7535419


 Score = 26.9 bits (58),  Expect(2) = 1e-19, Method: Compositional matrix adjust.
 Identities = 10/28 (36%), Positives = 22/28 (79%), Gaps = 0/28 (0%)
 Frame = +1

Query  313      QDHYHKMIELSAEARKSYEVMIANLDEE  340
                Q  +++++ L+ EARK+Y+ M++ L++E
Sbjct  7535521  QSLFNRLVSLTEEARKAYKDMVSALEQE  7535604


 Score = 54.7 bits (130),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/45 (56%), Positives = 32/45 (71%), Gaps = 0/45 (0%)
 Frame = +3

Query  55       PSVQKKQWQQEKTPHNPLDSTCPSVKKGKQREVPKAKKPTPLKRV  99
                PS+ K   Q    PHN LDST P +K+GK+RE+PK K+PT LK+V
Sbjct  7533261  PSMLKGHQQTYSVPHNSLDSTAPRIKRGKEREIPKVKRPTALKKV  7533395



Lambda      K        H        a         alpha
   0.314    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 48705266880


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40