TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000625_2.0 # Protein # Methionine sulfoxide reductase A (MsrA)
# Zebrafish

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171010.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  78.2    3e-15
ML171028.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  75.9    2e-14


>ML171010.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold7, whole genome shotgun sequence
Length=13290546

 Score = 78.2 bits (191),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 43/56 (77%), Gaps = 0/56 (0%)
 Frame = -2

Query  183      LSRKGLGEITTDIRQLTVFYYAEDYHQQYLHKVPKGYCGLKGTGVTCSITEGRDEL  238
                L +KG G ITT+IR+  +FYYAED HQQYL KVP GYC LKGTGV+C I   ++EL
Sbjct  6445001  LDKKGYGSITTEIREGQLFYYAEDDHQQYLKKVPNGYCNLKGTGVSCPIGARKEEL  6444834


 Score = 77.8 bits (190),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 34/46 (74%), Positives = 40/46 (87%), Gaps = 1/46 (2%)
 Frame = -1

Query  71       GMGCFWGAERRFWKITGVFSTQVGYAGGFTSNPTYHEVCSGLT-GH  115
                G+GCFWGAER FW++ GV++TQVG+AGGFT NP YHEVCSG T GH
Sbjct  6467814  GLGCFWGAERLFWRLPGVYTTQVGFAGGFTPNPNYHEVCSGDTLGH  6467677


 Score = 72.0 bits (175),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/39 (82%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
 Frame = -1

Query  108      VCSGLTGHTEVVRVVFSPKDVSLEKLLKVFWESHDPTQG  146
                +C GLTGH EVVRVVFSP+DV LE+LLK FWESHDPTQG
Sbjct  6464526  LCLGLTGHAEVVRVVFSPEDVGLEELLKRFWESHDPTQG  6464410


 Score = 49.7 bits (117),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/36 (64%), Positives = 28/36 (78%), Gaps = 0/36 (0%)
 Frame = -3

Query  146      GMAQGNDHGTQYRSAIYTYSPEQQDLAMKSKHMYQE  181
                GM Q ND GT YRSAIYT +P QQ+LA+KSK  +Q+
Sbjct  6453934  GMRQQNDRGTPYRSAIYTSNPTQQELALKSKVAFQQ  6453827


>ML171028.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold25, whole genome shotgun sequence
Length=6454106

 Score = 75.9 bits (185),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 37/43 (86%), Gaps = 0/43 (0%)
 Frame = -2

Query  69       MFGMGCFWGAERRFWKITGVFSTQVGYAGGFTSNPTYHEVCSG  111
                + GMGCFWG ER+FWK  GV+STQVGYAGG+T NPTY EVC+G
Sbjct  4609120  LVGMGCFWGVERKFWKQKGVYSTQVGYAGGYTPNPTYKEVCTG  4608992


 Score = 70.9 bits (172),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 42/62 (68%), Gaps = 0/62 (0%)
 Frame = -3

Query  170      DLAMKSKHMYQEALSRKGLGEITTDIRQLTVFYYAEDYHQQYLHKVPKGYCGLKGTGVTC  229
                +L M     + + L+ +G   ITT+I +   FYYAEDYHQQYL K P+GYCGL GTGV+C
Sbjct  4579146  NLQMCLCCCFFQVLAEEGYSAITTEIAEAKPFYYAEDYHQQYLSKNPEGYCGLGGTGVSC  4578967

Query  230      SI  231
                 I
Sbjct  4578966  PI  4578961


 Score = 56.6 bits (135),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 23/34 (68%), Positives = 28/34 (82%), Gaps = 0/34 (0%)
 Frame = -2

Query  110      SGLTGHTEVVRVVFSPKDVSLEKLLKVFWESHDP  143
                +G+TGH EVVRVVF P+ +S   LLKVFWESH+P
Sbjct  4604851  AGMTGHAEVVRVVFHPEQISFASLLKVFWESHNP  4604750



Lambda      K        H        a         alpha
   0.319    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 24562115732


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40