TBLASTN 2.7.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           10,816 sequences; 612,774,492 total letters



Query= SPP00000645_2.0 # Protein # Methionine-R-sufoxide reductase 1a
(MSRB1a) # Zebrafish

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ML171007.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  76.3    1e-27
ML171065.1  Anarrhichthys ocellatus isolate YVR2014 unplaced geno...  97.1    2e-23


>ML171007.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold4, whole genome shotgun sequence
Length=16548284

 Score = 76.3 bits (186),  Expect(2) = 1e-27, Method: Composition-based stats.
 Identities = 33/50 (66%), Positives = 41/50 (82%), Gaps = 0/50 (0%)
 Frame = +2

Query  18        SGMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYKV  67
                 +GMYVC+QC + LFSSRSK+ HSSPWPAFT+T+ EDSV+K  E   A+KV
Sbjct  12204050  AGMYVCSQCNHPLFSSRSKFAHSSPWPAFTDTVREDSVTKMMESLTAFKV  12204199


 Score = 66.2 bits (160),  Expect(2) = 1e-27, Method: Compositional matrix adjust.
 Identities = 30/39 (77%), Positives = 34/39 (87%), Gaps = 0/39 (0%)
 Frame = +1

Query  66        KVRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIPK  104
                 +V CGKCGNGLGHEFVNDGP+ G+SRF IFS SLKF+P 
Sbjct  12204301  QVLCGKCGNGLGHEFVNDGPEEGVSRF*IFSHSLKFVPN  12204417


>ML171065.1 Anarrhichthys ocellatus isolate YVR2014 unplaced genomic scaffold 
scaffold62, whole genome shotgun sequence
Length=2282809

 Score = 97.1 bits (240),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 60/94 (64%), Gaps = 25/94 (27%)
 Frame = -3

Query  1       MSFCSFSGGEIYKDHFE-------------------------SGMYVCAQCGYELFSSRS  35
               MS+CSFSGGE +K+HF+                         SG+YVC++CG+ELFSS S
Sbjct  731078  MSYCSFSGGEEFKNHFQAGE*RSMKSHRSENESPFIGTFFFLSGIYVCSECGHELFSSMS  730899

Query  36      KYEHSSPWPAFTETIHEDSVSKQEERWGAYKVRC  69
               K+EHSSPWPAF+ETIHED VSK  E WG  KV C
Sbjct  730898  KFEHSSPWPAFSETIHEDGVSKHPEAWGLLKVDC  730797


 Score = 88.2 bits (217),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 39/53 (74%), Positives = 49/53 (92%), Gaps = 0/53 (0%)
 Frame = -2

Query  16      FESGMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYKVR  68
               + SG+YVC++C ++LF+SRSK+EHSSPWPAFTETIHEDSVSK +ER GAYKV+
Sbjct  732792  YSSGVYVCSKCDHQLFTSRSKFEHSSPWPAFTETIHEDSVSKHQERPGAYKVQ  732634


 Score = 62.0 bits (149),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 32/39 (82%), Gaps = 0/39 (0%)
 Frame = -2

Query  66      KVRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIPK  104
               +V CGKCGNGLGHEF+ DG   GLSRF +FSSSL FIPK
Sbjct  730665  QVCCGKCGNGLGHEFLYDGLTEGLSRF*LFSSSLTFIPK  730549


 Score = 58.9 bits (141),  Expect = 4e-10, Method: Composition-based stats.
 Identities = 33/40 (83%), Positives = 36/40 (90%), Gaps = 0/40 (0%)
 Frame = -2

Query  65      YKVRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIPK  104
               ++VRCGKCGNGLGHEFVNDGP  G SRF IFSSSLKF+PK
Sbjct  732447  FQVRCGKCGNGLGHEFVNDGPARGSSRF*IFSSSLKFVPK  732328


 Score = 38.1 bits (87),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 15/22 (68%), Positives = 19/22 (86%), Gaps = 0/22 (0%)
 Frame = -1

Query  1       MSFCSFSGGEIYKDHFESGMYV  22
               MSFCSF GGE+YKDHF+ G ++
Sbjct  734644  MSFCSFFGGEVYKDHFKPGTFI  734579



Lambda      K        H        a         alpha
   0.319    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5083470100


  Database: genome.fa
    Posted date:  Oct 26, 2019  7:49 PM
  Number of letters in database: 612,774,492
  Number of sequences in database:  10,816



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40