_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-39
 Query name: gi|1002577066|ref|XP_015667711.1| PREDICTED: selenide, water dikinase 2 isoform X2 [Protobothrops mucrosquamatus]
 Query range: 25-366  (total 379)

 Target: /data/www-rg/seblastian_results/793197735/tempfiles/temptarget.fasta
 Chromosome: ML683863.1:subseq_1,63734_ Strand: +
 Positions:
 -Exon 1  6943         7162
 -Exon 2  7642         7745
 -Exon 3  8131         8238
 -Exon 4  11249        11403
 -Exon 5  11918        12008
 -Exon 6  12257        12356
 -Exon 7  12706        12953

 Redox box: no

Query   ALPPGPPGYRPFEPEAVGLSPGWRLTSYGELRGUGCKVPQETLLRLLEGLGTSHAGLAGAGDTGAAGNPPPTLG <---Intron---> IGMDSCVIPL
        |  ||||||||| |||/||/|||||| /||||||||||||||||||| |||   | /| ||   |  /     | <   479bp    > ||||||||||
Target  AAAPGPPGYRPFAPEALGLAPGWRLTGFGELRGUGCKVPQETLLRLLAGLGGGGAAVAVAGGEPAGPSLGERGG                IGMDSCVIPL
        gggcgccgtcctgcggcgcgcgtccagtggccgtgtagccgaccaccggcgggggggggggggcggctcggcgg                agagttgacc
        ccccgccgagctccactgtccgggtcgtgatgggggatcaacttgttcgtggggcctctcggaccgcctgagg                gtgtacgttct
        cgcccgcctgccgcgggcgctcgccgctgggccaccacgggggcgcggggcgcgctcgcggcgcggcggtggc                ctggtcccttc
                                         *                                                                  

Query   RHGGLSLVQTTDFFYPLVEDPYMM <---Intron---> GRIACANVLSDLYAMGITECDNMLMLLSISQKMTEE <---Intron---> EREKIMPL
        |||||||||||||||||||||||| <   385bp    > ||||||||||||||||||||||||||||/|||||/| <   3010bp   > ||||||||
Target  RHGGLSLVQTTDFFYPLVEDPYMM                GRIACANVLSDLYAMGITECDNMLMLLSVSQKMTDE                EREKIMPL
        ccggctcgcaagtttccgggctaa                gcagtgagcagctgagaagtgaataccagacaaagg                gcgaaact
        gaggtcttaccattacttaacatt                ggtcgcattgatactgtcagaatttttgtgaatcaa                agaattct
        gtgttctagtaccccagtgtccgg                ctcctccgattcccggccgtctgggggtccgagttg                gtagcgag
                                                                                                            

Query   IIKGFRDAAEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFIM <---Intron---> PDSAVPGDVLVLTKPLGTQVAVNAHQWLDN <---Intro
        ||||||||||||||||||||||||||||/||||||||||||||| <   514bp    > ||||||||||||||||||||||/||||||  <   248bp
Target  IIKGFRDAAEDGGTSVTGGQTVLNPWIIIGGVATVVCQPNEFIM                PDSAVPGDVLVLTKPLGTQVAVSAHQWLDI          
        aaagtcgggggggatgaggcagtactaaaggggaggtccagtaa                cgaggcgggcgcaaccgacgggagcctcga          
        ttagtgaccaaggcctcggacttacgtttggtccttgacaattt                cagctcgattttcactgcatctgcaagtat          
        acatcgttagttgaagacagtagtcgcctgctttggtgccacc                gactgttatgggccggacaggtccccgggtc          
                                                                                                            

Query   n---> PERWNKIKLVVSKEDVELAYQEAMFSMAMLNRTA <---Intron---> ASLMHTFNAHAATDITGFGILGHAQNLAKQQRSEVSFVIHNLPI
            > ||||||||||||//|||||||||||||||||||| <   349bp    > |||||||||||||||||||||||||||||||||||||||||||/
Target        PERWNKIKLVVSRDDVELAYQEAMFSMAMLNRTA                ASLMHTFNAHAATDITGFGILGHAQNLAKQQRSEVSFVIHNLPV
              cgctaaaacggtaggggcgtcggataagacaaag                gatacatagcggagaagtgacgcgcacgacccaggttgacaccg
              caggaatatttcgaatatcaaacttgtcttagc                ccgttactacacccatcgtgttgacaatcaaaggatctttaatct
              tgggcgtggggcattgggccgacgctgcggcgt                tccggctccttcccccactgcactcgcgcgggctacttcctcctc
                                                                                                            

Query   IAKMAAISKACGNRSRLLQGTSPETSGKLDKPGKEQAK
        ||||||||||||||  |||||||||||/ /  | /  |
Target  IAKMAAISKACGNRFGLLQGTSPETSGRAESQGPKNCK
        agaaggaaagtgactgcccgatcgatgaggacgcaata
        tcatcctgacggagtgttagcccaccggcagagcaaga
        tcggtcccgctgcgtagggcacggaatgagcgtcgtca
                                              
 Sequence until next stop: 
TGGTTTTGTAATTCACCTCACCATGGCCAGTTGGAAACTGCTGTCTCTCATCATCAGGCCTGCACATCCCCCAGGGACCTTCGGGGAAGCTGCTGGGACAATTTTGTAGATCAGAAGCTTGGCATCTCTAGGGTGAAGCTGGGACAAGACAACATGCATTTGGTGCTAGAGCCTCATGTGGGACAGCCTGTGACCAGAATGGGAGGCCTAGGTGTTGAGGGAGAGATGCCTGTGACTAACCTGGCAGAGCAAAATCTAGTACTTTCTTTTTCCATTATTGACTGA
 W  F  C  N  S  P  H  H  G  Q  L  E  T  A  V  S  H  H  Q  A  C  T  S  P  R  D  L  R  G  S  C  W  D  N  F  V  D  Q  K  L  G  I  S  R  V  K  L  G  Q  D  N  M  H  L  V  L  E  P  H  V  G  Q  P  V  T  R  M  G  G  L  G  V  E  G  E  M  P  V  T  N  L  A  E  Q  N  L  V  L  S  F  S  I  I  D  * 

 Distance CDS-SECIS: 1292 ; UGA-SECIS: 2216

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = ML683863.1:subseq_1,63734_ Strand = + Positions = 14246 - 14318
 Found by:  Infernal (score=29.83) Covels (score=18.32)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 1, 0
 Free Energy = -11.65

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({(((({(---....([[{(((((((.(........-............))))))))}]])..--....)}))))}))
 target  UUGCUCUCU---UCAAUGAAGCUCCUCCCCUUAAACC-CCAUGAGGGCUAGGAGGAGUCGAGGA--CCCCAUAGAGGGA
                         ****            ^^                        ****