_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-27
 Query name: gi|1007795488|ref|XP_015796520.1| PREDICTED: 15 kDa selenoprotein [Nothobranchius furzeri]
 Query range: 1-153  (total 153)

 Target: /data/www-rg/seblastian_results/783293624/tempfiles/temptarget.fasta
 Chromosome: SSNR01000598.1:subseq_2365,105330_ Strand: -
 Positions:
 -Exon 1  57089        57136
 -Exon 2  55160        55327
 -Exon 3  50292        50355
 -Exon 4  49935        49984
 -Exon 5  49710        49838

 Redox box: no

Query   MSGEVYLLWLLSLLKT <---Intron---> LSVYGAEVTSEACRELGFSSNLLCSSCDLLGEFSLTKLQPTCQRCCQQEAQVEARK <---Intron-
        |||||||||||||||| <   1761bp   > || |||||/||||||||||||||||||||||||||||||| | /|||||||/|||| <   4804bp 
Target  MSGEVYLLWLLSLLKT                LSAYGAEVSSEACRELGFSSNLLCSSCDLLGEFSLTKLQPNCGQCCQQEAQMEARK            
        atgggtcctcctccaa                ctgtggggttggtagcgttaacctattgccggtacaacccatgcttccggcaggca            
        tcgatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtcatacaggaggaaacatacga            
        ggaaccaggtgagggg                gagtgcggctgtcagtcccccggccctcgtagccccgcgactggtcgggcggaacg            
                                                                                                            

Query   --> LYAGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFRGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILK
          > |||||||||||||||||||||| <   307bp    > |||||||||||||||| <    96bp    > ||||||||||||||||||||||||||
Target      LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKMFRGLQIK                YVRGSDPVLKLLDDNGNIAEELSILK
            ctgggacggtgtacgatccgcg                tgaagacaatagccaa                tgagtgcgcaccggagaagggcaaca
            tacgcttatgggatggtcata                cttggaacattggtata                atggcacttattaaagatcaatgtta
            cttgcctggtaaagggctaca                ttcgccggagcgttacg                cgacttttagagctcgcctagccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLDRI
        |||||||||||||||||
Target  WNTDSVEEFLSEKLDRI
        taagagggtcagatgca
        gacagtaattgaatagt
        gcacctggcatggacaa
                         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 402 ; UGA-SECIS: 609

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000598.1:subseq_2365,105330_ Strand = - Positions = 49307 - 49232
 Found by:  Infernal (score=35.92) Covels (score=30.17)
 Stem2 length = 8   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -19.55

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((((((......{[[(((((({(((.......--..........)))}))))))]]}.....-..))))))))..
 target  CUGAAACACACGUUAGUGAAGACCUGACAGUAAACC--AGCUGUGGCAUGUGAGGUCUGAUGAGAG-UCUGUGUUUCUG
                         ****           ^^^                       ****