_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-38
 Query name: gi|951536674|ref|XP_014471736.1| PREDICTED: selenide, water dikinase [Dinoponera quadriceps]
 Query range: 36-410  (total 417)

 Target: /data/www-rg/seblastian_results/144124928/tempfiles/temptarget.fasta
 Chromosome: SSNR01000045.1:subseq_3297882,106274_ Strand: +
 Positions:
 -Exon 1  50022        50226
 -Exon 2  50669        50772
 -Exon 3  52852        52959
 -Exon 4  53209        53363
 -Exon 5  54081        54171
 -Exon 6  54957        55056
 -Exon 7  55190        55402
 -Exon 8  56057        56115
 -Exon 9  56152        56235

 Redox box: no

Query   RPFDPVAHDLESAFRLTRFADLKGUGCKVPQEVLGKLLEGLQAD----EGIPQDHEHAHFMHMAIPRIG <---Intron---> IGMDSSVTPLRHGGL
        /|| |  | |/  |||| |///|||||||||| | ||| ||/ |     |  /|        // ||/| <   442bp    > ||||| | |||||||
Target  KPFKPEEHGLDRGFRLTAFSEMKGUGCKVPQEALLKLLSGLEHDRADGSGKAEDQAGEFGQQLSGPRLG                IGMDSCVIPLRHGGL
        actacggcgcgcgtccagttgaagtgtagccggccacctgcgcgcgggtgagggcgggtgccttgcccg                agagatgactacggt
        actacaaagtaggtgtcctcataggggatcaacttattcgtaaagcagcgacaaacgatgaatcgcgt                gtgtaggttctgaggt
        gctgaagcggtcgttcaccaagaaaacgcgggtgcacggaggtcacttgggcatatggccaggcgggt                ttggcctgttaatagg
                                *                                                                           

Query   SLVQTTDFFYPLVDDPYMM <---Intron---> GKIACANVISDLYAMGVTDCDNMLMLLGVSTKMTEK <---Intron---> ERDVVVALLMRGF
        |||||||||||||/||||| <   2079bp   > |/||||||/|||||||/|/|||||||| || || || <   249bp    > /|/ |/ |/||||
Target  SLVQTTDFFYPLVEDPYMM                GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK                DRERVMPLMMRGF
        tcgcaagtttccgggctaa                gaagtgagcagctgagaagtgaatactagacaaaga                gcgcgaccaacgt
        cttaccattacttaacatt                ggtcgcattgatactgtcagaatttttgtgaataaa                agagttctttggt
        tgcacttctctgaatacgg                ggagttcccttcccgacaatccgggggcccgggtgg                taggggggggggt
                                                                                                            

Query   KDSALEAGTTVTGGQTVVNPWCTIGGVATTVCQPNEYIV <---Intron---> PDNAVVGDVLVLTKPLGTQVAVNAHQWLDQ <---Intron--->
        /|/| | ||/|||||||||||  /||||/ ||||||/|/ <   717bp    > || || |||||||||||||/|||||||||| <   785bp    >
Target  RDAAEEGGTSVTGGQTVVNPWIIVGGVASVVCQPNEFIM                PDGAVPGDVLVLTKPLGTQMAVNAHQWLDQ               
        cgggggggatgaggcaggactaagggggtggtccagtaa                cggggcgggcgcaaccgacaggagcctcgc               
        gaccaaggcctcggacttacgtttggtccttgacaattt                cagctcgattttcactgcatctacaagtaa               
        tcaagaaggggcatgggccggcctacggtcccgtcgcc                gttagacgttgtgtatggcggcgttcggcta               
                                                                                                            

Query    PDRWNRIKLVVSEDDVRKAYQRAMDSMARLNRTA <---Intron---> ARLMHKYNAHGATDVTGFGLLGHAQNLAKHQKNEVSFVIHNLPVIAKMA
         |//||/|||||////|//||| || ||/ ||||| <   133bp    > | ||||| || ||||||||||||| |||  |||||||||||||/||||/
Target   PEKWNKIKLVVTKEEVKEAYQEAMFSMSTLNRTA                AHLMHKYQAHAATDVTGFGLLGHANNLAAQQKNEVSFVIHNLPIIAKMS
         cgataaaacggaagggaggtcggattatacacag                gccacatcgcggaggagtgttgcgaacggccaaggttgacaccaagaaa
         caagaatatttcaaataacaaacttctcctagc                ccattaaaacacccatcgtgttgacaatccaaaaatctttaatcttcatg
         taggcgcgtcccagataagtgacgccggaacaa                gtcagcgcgtctgacggtttggaccctgaagggtggcctcccaacatggt
                                                                                                            

Query   AVAKACGNMFQLLQGHSAETSG <---Intron---> GLLICLPREQAAAYCKDIE <---Intron---> KQEGYQAWIIGIVEKGNRTARIIDKPR
        |//|| ||/|/|||| |||||| <   654bp    > |||/|||||||| /| /// <    36bp    >       ||||||||||/|/||||||||
Target  AISKAGGNLFKLLQGRSAETSG                GLLVCLPREQAAKFCSEMK                ------AWIIGIVEKGDRSARIIDKPR
        gaaagggactacccgctggatg                gccgtccagcggatttgaa                ------gtaagaggaggcagcaagacc
        ctgacggattattaggccacc                ggtttgtcgaaccatgcata                ------cgttgttaagaggcgttaacg
        cctaccacgcagggcaacgcc                tggggtaggggatgtctgga                ------ggctacggacccccacccgtc
                                                                                                            

Query   VIEVPAK
        /|||| /
Target  IIEVPPR
        aaggccc
        ttatccg
        ctgggca
               
 Sequence until next stop: 
GGAAGCCAGGCAGCAAATCAGGAAAACAGCGCCACCAACCTGGACACGAGCAGCAACTCGTCCTAG
 G  S  Q  A  A  N  Q  E  N  S  A  T  N  L  D  T  S  S  N  S  S  * 

 Distance CDS-SECIS: 406 ; UGA-SECIS: 1450

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000045.1:subseq_3297882,106274_ Strand = + Positions = 56642 - 56723
 Found by:  Infernal (score=30.04) Covels (score=23.75)
 Stem2 length = 9   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -14.83

         ..(((((((.......((((((((((((.(((................)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(({{(((.......{[[((((((((((.....................))))))))))]]}.......-...)))}}))..
 target  UACUUUUCCUUUUUAAUGAAGCUCUGCUUUUUAAACCCCGACCUGGGGCCAGGUGGAGCUGAUGUUUGCC-UUCGGAUUAGAG
                         ****            ^^                         ****