_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-14
 Query name: gi|1007726120|ref|XP_015804284.1| PREDICTED: migration and invasion enhancer 1 [Nothobranchius furzeri]
 Query range: 8-43  (total 95)

 Target: /data/www-rg/seblastian_results/458445382/tempfiles/temptarget.fasta
 Chromosome: SSNR01000030.1:subseq_3848081,105065_ Strand: +
 Positions:
 -Exon 1  55065        55172

 Redox box: no

Query   EYCGGUGYGPRYQELAQVIKGEFPEVDVSGFVGRRG
         / ||||/ ||/|/|  /|| /||| |||| |||||
Target  SFSGGUGHFPRFQDLMTLIKAKFPETDVSGNVGRRG
        ttaggtgctcctcgcaacaagatcgaggtgaggaag
        ctgggggatcgtaattcttacatcacatcgatgggg
        ttttaaactcgtgtcggtcatgttattgtctgaaat
             *                              
 Sequence until next stop: 
AAATAA
 K  * 

 Distance CDS-SECIS: 467 ; UGA-SECIS: 557

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000030.1:subseq_3848081,105065_ Strand = + Positions = 55640 - 55715
 Found by:  Infernal (score=26.87) Covels (score=19.28)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -24.79

         ..(((((((........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ((((((((((.......([[{(((((((((((........-----..)))))))))))}]]).......-..))))))))))
 target  GAGCUUCAGGCUGUCAAUGAUUACCGUGGCUUCAAAUCUU-----AAAGGUUAUGGUAUGAAGAAUCUA-UUCCUGAAGUUC
                          ****            ^^^                      ****                    
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-16
 Query name: gi|835924519|ref|XP_004552472.2| PREDICTED: migration and invasion enhancer 1 [Maylandia zebra]
 Query range: 2-95  (total 95)

 Target: /data/www-rg/seblastian_results/458445382/tempfiles/temptarget.fasta
 Chromosome: SSNR01000030.1:subseq_3848081,105065_ Strand: +
 Positions:
 -Exon 1  50000        50123
 -Exon 2  50275        50351
 -Exon 3  50432        50512

 Redox box: no

Query   GVKVRVEYCGGUGYEPRYRELARVVKGEFSDADVTGFVGRTG <---Intron---> SFEIEINGQLVFSKVETGGFPYEDD <---Intron---> V
         /||     ||||||||||||||||/ |||||||/|||||   <   151bp    > |||/ |||||||||/|| ||||||| <    80bp    > /
Target  ALKVFSRCSGGUGYEPRYRELARVVQDEFSDADVSGFVGRLA                SFEVTINGQLVFSKLETKGFPYEDD                I
        gtagttctaggtgtgcctcgcgcggcggttggggtgtggacg                atggaaagccgttacgaagtctggg                a
        ctattcgggggggaacgagatcgttaaatcacatcgttggt                cgtatctagatttcatacagtcaaaa                t
        tagatttcttaaacacctggccgtcgtgtctgtgactgaaa                cctgtgccggttccgtgagccgtgtc                c
                   *                                                                                        

Query   MNAIQNAYDGKPLQKITKSRAPCVIM
        ||||||||||||/|||||||||||||
Target  MNAIQNAYDGKPVQKITKSRAPCVIM
        aagacagtggacgcaaaaacgctgaa
        tactaacaagactaatcaggccgttt
        gtacgttttgatgggccaccagtccg
                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 197 ; UGA-SECIS: 443

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = SSNR01000030.1:subseq_3848081,105065_ Strand = + Positions = 50710 - 50785
 Found by:  Infernal (score=26.41) Covels (score=22.53)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.69

         ..(((((((........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..({((((((.......([[{((((((((((.........-----...))))))))))}]]).......-..))))))})..
 target  GUGCUUCAGGCUGUCAAUGAUUACUGUAGCUGAAAAUCUU-----AAAGGUUAUGGUAUGAAGAAUCCA-AUCCUGAAACUC
                          ****           ^^^                       ****