_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-98
 Query name: gi|1043260120|ref|NP_001316366.1| ethanolaminephosphotransferase 1 [Danio rerio]
 Query range: 1-400  (total 400)

 Target: /data/www-rg/seblastian_results/162508445/tempfiles/temptarget.fasta
 Chromosome: SSNR01000055.1:subseq_1440028,105948_ Strand: +
 Positions:
 -Exon 1  48164        48220
 -Exon 2  50003        50071
 -Exon 3  50446        50554
 -Exon 4  51112        51186
 -Exon 5  52814        53076
 -Exon 6  53174        53282
 -Exon 7  53359        53407
 -Exon 8  53479        53659
 -Exon 9  53750        53929
 -Exon 10 55844        55948

 Redox box: no

Query   MALYHYVTQEQLSGFDKYK <---Intron---> YSAVDSNPLSIYVMHPFWNSVVK <---Intron---> VLPTWLAPNLITFTGFMFLVLTFTML
        |||| |||||||/|||||| <   1782bp   > |||||/||||/|/|||||| ||| <   374bp    >  |||||||||||||||||||| | ||
Target  MALYEYVTQEQLAGFDKYK                YSAVDTNPLSVYIMHPFWNFVVK                FLPTWLAPNLITFTGFMFLVLNFLML
        agctgtgacgccggtgata                tagggaacctgtaaccttatgga                tccatcgcacaatagtatcgtatcat
        tctaaatcaaatcgtaaaa                agctacactctattactgattta                ttccgtccattctcgttttttatttt
        gttcatttgggcacccgcg                ccagcatcgccctgttcgctggg                ttgaggtaccaacattgcccgcccgg
                                                                                                            

Query   SFFDFDFYASG <---Intron---> EGHTHVPSWVWIAAGLFNFLAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        /|/|||| ||  <   557bp    >  || |||||||/|||/||||||||| <   1627bp   > ||||||||||||||||||||||||||||||||
Target  AFYDFDFNAST                AGHEHVPSWVWVAAGIFNFLAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        gttgtgtagta                ggcgcgcatgtggggatattgtacg                ggggacgccaattaccggctgcgcgatgtgtt
        ctaatatacc                ccgaaatcggtgtccgttattcact                agtagaacggcacccctgattaagtaggcgttt
        cctctcttca                tgatataccgcgttagccccaccac                taactaggccacccgaaggttcctgccggcgcc
                                                                                                            

Query   VATVYSVFGRGETGVSVVTLYYLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISIVYIITAVVGVETWYKPVFLNIHYRD
        ||||||/|||||/||||/||||/||||||||||||||||||||||||||||/||| <    97bp    > |||/||//|||||||||| |||  / |||
Target  VATVYSIFGRGESGVSVITLYYILWVVLFSFILSHWEKYNTGILFLPWGYDMSQV                TISLVYLVTAVVGVETWYLPVFWTLLYRD
        ggagttatgcggaggagaacttactggctttactctgataagactcctgtgaacg                aatcgtcgaggggggattccgttacctag
        tcctacttgggaggtgttctaattgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgatcttgcttaga
        gccgccatgtggccgtgcgccccgggggccccgtcggaccttcgcgcgaccgcag                cccttcgcttggaaacgcaaccgcctcac
                                                                                                            

Query   LFTVMIIG <---Intron---> CLFVVTLPMSLYNVFK <---Intron---> AYRNNTLKHSSLYEALLPFFSPVLLFVLSTLWISFSPTNIVQKQ
        ||| |||  <    76bp    > | | /||||||||| | <    71bp    > |/|/|||||||/||| ||| ||||||/|||/|/ |||/||// |
Target  LFTFMIIA                CSFTITLPMSLYNVLK                AHRSNTLKHSSMYEAFLPFLSPVLLFILSTVWVVFSPSNILELQ
        ctataaag                tttaaatcaactagca                gccaaacacaaatggtcctctcgcctattagtggttctaacgcc
        ttctttt                cgctctctctgtaatta                caggactaaggtaacttcttccttttttcctgtttcccattata
        ccttgcc                ctctcagacgcccccg                gtcgtctggcccgcagcgtcttccccccgcctgccctacctgggg
                                                                                                            

Query   PRIFYLMVGTAFSNVT <---Intron---> CKLIVCQMSNTRCKPLSLLLLPMSIVVLLVISGTVQGGESLVLFIWTAVVLLTHIHYGVSV <---In
        |||/||||||||/||| <    90bp    > |||||||||||||/||| |||||/ |||| //  |   |///|//||| |/| |||||/|| <   19
Target  PRIYYLMVGTAFANVT                CKLIVCQMSNTRCQPLSWLLLPMTAVVLLAVT-RVLTNETMLLYVWTAAVILAHIHYGLSV       
        caattcaggagtgaga                tacagtcaaaactcccatccccaagggctgga-agcaagaacctgtagggacgcactgttg       
        cgtaatttgcctcatc                gatttgatgacggactggtttctccttttctc-gttcaactttatgccctttcataagtct       
        cgccccggagttccct                tggtgtggtcaccgggcggggcgctgtgacgg-accccggggttgggttcccacacccagg       
                                                                                                            

Query   tron---> VKQLSDHFNIFAFSLKKPNSDUQDEEKIGLKAAEV
        14bp   > |/||| |||| |||||||| |||/||/||| | /|
Target           VQQLSGHFNILAFSLKKPNRDUQEEERIGLTAEDV
                 gcccagctaatgttcaacacgtcgggcagtagggg
                 taatggatattctctaacagagaaaagtgtccaat
                 tagcccttccggccggggctcagggaaccggagct
                                      *             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1034 ; UGA-SECIS: 1073

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000055.1:subseq_1440028,105948_ Strand = + Positions = 56983 - 57066
 Found by:  Infernal (score=33.45) Covels (score=30.95)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -17.32

         ..(((((((..............(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((({(..............([[(((((((((((..................)))))))))))]])..--....)})))))..
 target  GUUGAAGUCCCGCGGCGCUUGAAUGAAGAGUGAGUCCAAAAACCAGAACUGGAGCGGACUCACUCUGAGGA--ACAAGCUUUCGCA
                                ****          ^^^                         ****