_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-21
 Query name: gi|1039360004|ref|XP_008418530.2| PREDICTED: selenoprotein H [Poecilia reticulata]
 Query range: 5-126  (total 126)

 Target: /data/www-rg/seblastian_results/811231389/tempfiles/temptarget.fasta
 Chromosome: SSNR01000176.1:subseq_456964,100661_ Strand: -
 Positions:
 -Exon 1  52148        52272
 -Exon 2  50508        50650
 -Exon 3  49905        50008

 Redox box: YES

Query   AGRRGTKRKA----EEVQTFTEEKKEKGEEESGQNGLKVVIEHC <---Intron---> KSURVYGRNAEEVKSALLAARPGLTVVLNPEKPRRNSFEI
        /|||||||||    || || ||||||/|||/  | ||||||||| <   1497bp   > ||||||||||||||| |||| |||||||||||||||||||
Target  SGRRGTKRKAEVQVEEEQTPTEEKKERGEED--QQGLKVVIEHC                KSURVYGRNAEEVKSTLLAAHPGLTVVLNPEKPRRNSFEI
        tgccgaacagggcggggcacaggaagagggg--ccgcaggagct                aatcgtgcaggggataccggccgcaggcacgaccaaatga
        cggggcagacatataaaacccaaaaaggaaa--aagtatttaag                agggtaggacaataccttccacgtctttacaacggagtat
        attacggcgggtgtggggacagggggaaggc--ggctggctac                tacaagtgttcgggatctgtcctcgtgccccaaccacctgc
                                                                      *                                     

Query   TLLDGGKE <---Intron---> TSLWTGIKKGPPRKLKFPQPDSVVAALHEALKTE
        |||||||| <   499bp    > ||||||||||||||||||||| | ||| ||||||
Target  TLLDGGKE                TSLWTGIKKGPPRKLKFPQPDVVAAALQEALKTE
        accgggag                atctagaaagcccacatcccggggggccggtaag
        cttagga                acctgcgtaagccgatatcacattccctaactaca
        tggtaca                aatggaaaggtattgggttacttttttggatagta
                                                                  
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 205 ; UGA-SECIS: 442

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000176.1:subseq_456964,100661_ Strand = - Positions = 49699 - 49628
 Found by:  Infernal (score=20.74) Covels (score=31.5)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -18.39

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({{(---....([[{((((((((((......-..........))))))))))}]])..--....)}}))))..
 target  UGUGGAAGC---AAAAUGAUGAGGAGGGACCAAGGA-GAAGUUCUCAGUCCCUUUUCUGAAGA--GCUGGGCUCCAAG
                         ****           ^^                        ****