_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-17
 Query name: gi|1007719429|ref|XP_015801178.1| PREDICTED: methionine-R-sulfoxide reductase B1-A-like isoform X1 [Nothobranchius furzeri]
 Query range: 1-110  (total 110)

 Target: /data/www-rg/seblastian_results/907871907/tempfiles/temptarget.fasta
 Chromosome: SSNR01000104.1:subseq_1172793,101999_ Strand: -
 Positions:
 -Exon 1  52469        52523
 -Exon 2  51847        51989
 -Exon 3  51569        51683
 -Exon 4  51430        51446

 Redox box: no

Query   MSFCSFFGGEVFKDHFKPG <---Intron---> IYVCSKCDHQLFSSRSKYEHSSPWPAFTETIHEDSVSKYEERPGVYK <---Intron---> VL
        ||||||||||||||||||| <   479bp    >  |||||||||||||||||||||||||||||/|||||/||||||| || <   163bp    > ||
Target  MSFCSFFGGEVFKDHFKPG                YYVCSKCDHQLFSSRSKYEHSSPWPAFTETVHEDSVTKYEERPGAYK                VL
        attttttggggtagctacg                ttgttatgcccttactatgcttctcgtagagcggagaatggacggta                gt
        tctgcttggattaaatac                gaatgcagaaattcggcaaaacccgcctcactaaagtcaaaagcgcaa                tt
        ggcctcccagctacttaa                gttttcgtccggccccagcgtctcgaccagactgctgcatggatggcg                gg
                                                                                                            

Query   CGKCGNGLGHEFVNDGPNRGLSRFUIFSSSLKFIPKD <---Intron---> KVDGQ
        ||||||||||||/|||| /||||||||||||||/||| <   122bp    > |||||
Target  CGKCGNGLGHEFMNDGPKKGLSRFUIFSSSLKFVPKD                KVDGQ
        tgatgagcgcgtaaggcaagctcttataatcatgcag                agggc
        ggaggagtgaattaagcaagtcgtgttggctattca                aataga
        tggtacagttgcgtctagaagtccaaccccggccta                tgttag
                                *                                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 60 ; UGA-SECIS: 111

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000104.1:subseq_1172793,101999_ Strand = - Positions = 51369 - 51290
 Found by:  Infernal (score=21.22) Covels (score=20.18)
 Stem2 length = 9   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -12.99

         ..(((((((.......(((((((((((((((..................)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..([(({((---....{[[((((((((((......................))))))))))]]}.......-...))}))])..
 target  UGUGGACAG---UUUAUGAAGAGUUCUGGGACAAAGUCCUUUCUUGGAGCACCAGGGCUCUGAUGAACAGU-GGCCUAUCAGAC
                         ****            ^^                          ****                    
_________________________________.______________________._____________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_blast category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_____________________________________________________________________________

 Blastx evalue: 4e-25
 Query name: gi|1007719429|ref|XP_015801178.1| PREDICTED: methionine-R-sulfoxide reductase B1-A-like isoform X1 [Nothobranchius furzeri]
 Query range: 1-107  (total 110)

 Target: /data/www-rg/seblastian_results/907871907/tempfiles/temptarget.fasta
 Chromosome: SSNR01000104.1:subseq_1172793,101999_ Strand: -
 Positions:
 -Exon 1  50384        50440
 -Exon 2  50173        50310
 -Exon 3  50049        50102
 -Exon 4  49991        50044

 Redox box: no

Query   MSFCSFFGGEVFKDHFKPG <---Intron---> IYVCSKCDHQLFSSRSKYEHSSPWPAFTETIHEDSVSKYEERPGVYKV <---Intron---> L
        ||/||| ||||/|/||/|| <    73bp    >   /||/| |/|||| ||/||||| |||/||/|/|||||/ |  |  || <    70bp    >  
Target  MSYCSFSGGEVYKNHFQPG                --LCSECGHELFSSTSKFEHSSPRPAFSETVHKDSVSKHPEAWGPIKV                C
        attttttggggtaactccg                --cttgtgcgtttaatatgcttcccgttgagcagagtaccggtgcaag                t
        tcagctcggataaaatacg                --tgcaggaattcgccataacccgcctcactaaagtcaacacggctat                g
        gctctcaagattatccgtt                --gttgtctgatactaatgctttgtctagtctgctcaactgcgacaga                t
                                                                                                            

Query   CGKCGNGLGHEFVNDGP ! FRAME ! NRGLSRFUIFSSSLKFIPKDKV
        ||||||||||||/ ||| ! SHIFT !     ||||/||||| || | //
Target  CGKCGNGLGHEFLGDGP           ----SRFUVFSSSLMFIHKSEL
        tgatgagcgcgtcgggc    4bp    ----tcttgtaatcatacaagt
        ggaggagtgaattgagc           ----cgtgttggcttttaagat
        tagtgtagctgcgttag           ----accacccctggtctatga
                                           *              
 Sequence until next stop: 
GCCATTTGTTTTTGTTCAGCTTTAATGTAA
 A  I  C  F  C  S  A  L  M  * 

 Distance CDS-SECIS: 117 ; UGA-SECIS: 159

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = SSNR01000104.1:subseq_1172793,101999_ Strand = - Positions = 49873 - 49798
 Found by:  Infernal (score=18.75) Covels (score=16.94)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -10.81

         ..(((((((........((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((((({(........{[[{{(({((.((((......-..........))))))}))}}]]}..--..-.)})))))).
 target  CCUGUCUCCACACUACAUGACAUGCUCCAGGACAAAAC-CUAUUGGGUCUCCUGGACACUGAUGA--AU-GGUGGACGGC
                          ****            ^^^                       ****