_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-43
 Query name: gi|908521280|ref|XP_013126092.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial-like [Oreochromis niloticus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/706508591/tempfiles/temptarget.fasta
 Chromosome: SSNR01000127.1:subseq_419597,100803_ Strand: -
 Positions:
 -Exon 1  51882        51944
 -Exon 2  51034        51128
 -Exon 3  50657        50801
 -Exon 4  50387        50538
 -Exon 5  50142        50166
 -Exon 6  50003        50062
 -Exon 7  49583        49612

 Redox box: no

Query   MWLWRSSAVLSLVGSRGVVRSM <---Intron---> CAQVGDWRSAKSIYEFSAKDIDGNEVSLEKYR <---Intron---> GYVCIIVNVASKUG
        ||| | / /| //|//|/|||| <   753bp    > |||| ||//||||||||||||||||||||||| <   232bp    >  /||||||||||||
Target  MWL-RPTVLLGVLGTKGLVRSM                CAQVRDWQTAKSIYEFSAKDIDGNEVSLEKYR                DHVCIIVNVASKUG
        atc-ccagctggcgaagcgaaa                tgcgagtcagatatgttgagaggaggtcgata                gcgtaagaggtatg
        tgt-gcctttgttgcagttggt                gcatgagaccactaatccaatagaatctaaag                aatgtttatccagg
        ggg-caaggggggccaaaggtg                ttgcacgatcgcccgcttgcctccgtttgat                atcgcctacactaat
                                                                                                          * 

Query   KTRVNYTQLAEMHASYAEKGLRILGFPCNQFGGQ <---Intron---> EPGTEAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKAQPKGKGTLG
        ||/|||||| |||| |||/||||||||||||||| <   118bp    > ||||||/||||||||| ||||||||/||||/||||||||||||||||| |
Target  KTKVNYTQLVEMHARYAERGLRILGFPCNQFGGQ                EPGTEADIKEFAKGYNVEFDLFSKIDVNGDDAHPLWKWMKAQPKGKGTFG
        aaagataccggacgctggagtcacgtctactggc                gcgagggaagtgagtaggtgctaaaggaggggccttataagccagagatg
        acataacattatacgacaggtgttgtcgaatgga                acgcacataatcagaatatattgatatagaacactgagtacacagagctg
        acgacctgtgagcccttgataccgccaccgtaag                gacaaattagtcacctagttcctgttgctcctctggggggtacaagatta
                                                                                                            

Query   N <---Intron---> NIKWNFTK <---Intron---> FLINREGQVVKRYGPTDDPS <---Intron---> VVEKDLPTYL
        | <   220bp    > |||||||| <    79bp    > |||// |||||||||||||  <   390bp    > |||||||||/
Target  N                NIKWNFTK                FLIDKSGQVVKRYGPTDDPI                VVEKDLPTYM
        a                aaatataa                tcagaagcggaatgcaggca                gggagccata
        a                atagatca                tttaaggattagagccaact                ttaaatccat
                        cccagctag                tttcgtgggggactaattat                ggggcgcgcg
                                                                                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 61 ; UGA-SECIS: 433

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000127.1:subseq_419597,100803_ Strand = - Positions = 49521 - 49444
 Found by:  Infernal (score=30.77) Covels (score=29.84)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 1, 0
 Free Energy = -10.75

         ..(((((((.......((((((((((((.(((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((({((((....{[[{(({(((((.(....................))))))}))}]]}..--.))))})))))))
 target  UGUGUGCCUGGACCAGUGACGGCUCUGCCUAUAAACCCAUGACUGGGACGGGCAGAACCUGAUGA--UUUUAAGCGUGCA
                         ****            ^^^                        ****