_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-31
 Query name: gi|67083759|gb|AAY66814.1| selenium dependent salivary glutathione peroxidase [Ixodes scapularis]
 Query range: 45-197  (total 218)

 Target: /data/www-rg/seblastian_results/51799811/tempfiles/temptarget.fasta
 Chromosome: SSNR01000183.1:subseq_652039,100778_ Strand: +
 Positions:
 -Exon 1  50027        50128
 -Exon 2  50213        50306
 -Exon 3  50433        50563
 -Exon 4  50647        50778

 Redox box: no

Query   FKDVLEKDTIPLSRFKGYVALVVNVATYUGLTPT <---Intron---> YLQLNALQARFGERNFTVLGFPCNQFGKQEPG <---Intron---> TR
        | / |/ | /||| /|| | |||||||/|| |   <    84bp    > | //|||   || |||||||||||||| | |  <   126bp    >   
Target  FAETLDGDQVPLSIYKGKVLLVVNVATFUGATIE                YHRMNALMEMFGNRNFTVLGFPCNQFGLQSPE                VN
        tggatgggcgccaatagagccggaggattggaag                tccaagcagatgacatagtgtctactgcctcg                ga
        tcactagaatctgtaagatttttatcctggccta                aagtacttattgagatcttgtcgaatgtacc                ata
        ttgtgtatgttgcccgaagtcccttgccagaaag                tcagtaggagtccccctgaaccccgtttgat                ggt
                                    *                                                                       

Query   QEILNGIRYVRPGNNYVPNFPMFQKIEVNGENQHPLYTFLK <---Intron---> GRCTSPNPVFSAKDKLFYSPQNNNDIRWNFEKFLVDRRGVPVK
         |/|| //|||||  /|| ||/| |/|||| |/ ||/|/|| <    83bp    >       |||     | //||   |||||||||||//  |/| |
Target  PEMLNILKYVRPGGGFVPKFPVFSKVEVNGLNEEPLFTYLK                ESLPFVNPVIGDIKKFYWSPIKVNDIRWNFEKFLINADGMPFK
        cgacaacatgacgggtgcatcgttagggagtaggcctatca                gtcctgacgaggaaattttcaagagaatatgatcaagggacta
        cattattaatgcgggttcatcttcatatagtaaacttcata                actcttacttgataatagcctataatggataatttacagtcta
        tagcttggtgatatgtgagtttccgtggtgataattcccag                aatatgtttaactggccgtaaactttagttggtaatatagcta
                                                                                                            

Query   R
        |
Target  R
        a
        g
        g
         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 148 ; UGA-SECIS: 520

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000183.1:subseq_652039,100778_ Strand = + Positions = 50927 - 51008
 Found by:  Infernal (score=10.06) Covels (score=16.94)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 2
 Free Energy = -8.36

         ..(((((((.......(((((((((((((((...............)))))))..))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca--ggcCuGAUGuu--u-uuucaugaccggc
         ..(((([((.......{[[{(((({(((((.................)))))}..))))}]]}.......-...))]))))..
 target  UUCACUGGUGGCAGAUUGACGAUCCCUCAGUCAAUGCACAUGUGCACCUGAGCUGGAUUUGAUGGGAAGA-GGAACAAGUGUC
                         ****            ^^                         ****