_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-92
 Query name: gi|928011304|ref|XP_013867671.1| PREDICTED: glutathione peroxidase 2 [Austrofundulus limnaeus]
 Query range: 4-218  (total 218)

 Target: /data/www-rg/seblastian_results/165920397/tempfiles/temptarget.fasta
 Chromosome: SSNR01000222.1:subseq_746952,100731_ Strand: -
 Positions:
 -Exon 1  50510        50803
 -Exon 2  49994        50344

 Redox box: no

Query   VTRRQDTVASKGPKRLQCSSKVADMTFIAKTFYDLRATSLEGDSVDFNVFRGRVVLIENVASLUGTTTQDFSELNQLQSKYPHRLVVLGFPCNQFGYQ <
        | /| ||     |  ||| |/ |/|/||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||||| <
Target  VIKRLDTCTHWDPDCLQCGSEGAEMSFIAKTFYDLRATSLEGDSVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ  
        gaactgatactgcgtcctgaggggattagaattgcagatcgggtggtagtagcggcagaggtctgaaacgtagcacccaatccccggcgtctactgtc  
        ttagtacgcagacagtagggagcatcttcactaatgccctagactatattgggttttaatcctggcccgatgataatagaacagttttgtcgaatgaa  
        ccatgtccacgtacccgtccaacgggcccgccccggcctggacggctcctgatgccagtgcgcaccccgcccgccgtgcacttgggcgttctcgtacg  
                                                                       *                                    

Query   ---Intron---> ENCTNGEILSSLQHVRPGGGFKPNFGVFEKCDVNGENTHPVFAYLKNKLPYPDDDPXSLMQDPKFLVWSPISRMDISWNFEKFLIG
           165bp    > |||||||||/||||||||| ||||| /|||||||| ||||||||||/||||||||| |||||||||||||||| |/||||||||||
Target                ENCTNGEILNSLQHVRPGGDFKPNFTMFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSSLMQDPKFLVWSPISRADVSWNFEKFLIG
                      gataaggacatcccgccgggtacataatgatggagaaaccgtgtcagacctcgggcatcacgcatcgtacaaagggttatgatcag
                      aagcagattactaatgcggatacatcttaagatagcacacttcataaatcacaaacgcttaacatttggctggcatcgataatttg
                      gcccttgcgccggtgcattccgtcccgtggccccaacactccctggcacctttccccccggtcacgtgtcccgacccgccggcccg
                                                                                                            

Query   PEGEPFKRYSRKFPTIEIEPDIQRLLRLTKA
        ||||||||||| /|||/|||||||||||||/
Target  PEGEPFKRYSRNYPTIDIEPDIQRLLRLTKS
        cgggctaataaatcaagagcgacactataat
        cagactagaggaacctatacatagttgtcac
        ggggctgaccgtcccccagtctaagaaacgc
                                       
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 71 ; UGA-SECIS: 524

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000222.1:subseq_746952,100731_ Strand = - Positions = 49922 - 49848
 Found by:  Infernal (score=20.87) Covels (score=15.6)
 Stem2 length = 10   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -13.54

         ..(((((((.......((((((((((((.(((...............))).))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgg-gccaggcCuGAUGuu-u-uuucaugaccggc
         .(((((({((......([[((((((((({((......-..-----...))})))))))))]])......-..))})))))).
 target  UUUAAGCCUUAAUGAAUGAGGAUGAUAUUCUGAAACG-UU-----GAGGGCAUAUCAUCUGAGACCUUA-UAAGUGCUUAAC
                         ****            ^^^                        ****