_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-68
 Query name: gi|1041071740|ref|XP_017263494.1| PREDICTED: glutathione peroxidase 1-like [Kryptolebias marmoratus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/563871633/tempfiles/temptarget.fasta
 Chromosome: SSNR01000129.1:subseq_243845,100757_ Strand: -
 Positions:
 -Exon 1  50533        50757
 -Exon 2  49994        50341

 Redox box: no

Query   MAGNIKRFYDLTAKLLSGEPFSFSALKGKVVLIENVASLUGTTIRDYTQMNELHSRYSTEGLVILSVPCNQFGHQ <---Intron---> ENAKNDEIL
        || |/| |||||||||||| |/|||||||||||||||||||||/|||||||||||||| /||||| ||||||||| <   191bp    > || ||||||
Target  MARNVKMFYDLTAKLLSGEAFNFSALKGKVVLIENVASLUGTTVRDYTQMNELHSRYSAKGLVILGVPCNQFGHQ                ENTKNDEIL
        agaagaattgcagacctgggtattgcagaggcagaggtctgaagagtacaagcctcttgagcgatggctactgcc                gaaaaggat
        tcgatattaatccattcgactatcctagattttaatcctggcctgaacataatacgaccagttttgtcgaatgaa                aacaaaatt
        gcgttagtcccatgggttatttctagggactttgcggtcaaaacgtcgagcgcttccccgtcttgtgcctgtatg                gtcattgcg
                                               *                                                            

Query   RSLKYVRPGDGFEPKFPLLEKVDVNGKDAHPLFAYLREKLPVPCDDATALMTDPKFIIWSPVCRNDISWNFEKFLITADGEPYKRYSRHFLTIDIEADIK
        |||||||||/|||||| |||||| ||||||||| ||/| || | ||||||||||||||||||||/|||||||||||/||||||||||||||||||| |||
Target  RSLKYVRPGNGFEPKFQLLEKVDANGKDAHPLFVYLKENLPFPSDDATALMTDPKFIIWSPVCRSDISWNFEKFLISADGEPYKRYSRHFLTIDIEEDIK
        atcatgccgagtgcatcccgagggagaggccttgtcagacctcagggagcaagcataatacgtaagattatgatcaaggggctactaactcaagagggaa
        gctaatgcgagtacatattaatacagaacactttataaatctcgaacccttcacatttggctgggatcgataatttgcagacaagaggattctataaata
        gcggtctagtctaagcgccgggtctagtcccgtgtgagccacctttctctgctagcccgtggcgccacgttggtgctttgatcgcccgccctactgacta
                                                                                                            

Query   ELLKRVK
        |||||/|
Target  ELLKRIK
        gctaaaa
        attagta
        gagggcg
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 163 ; UGA-SECIS: 616

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000129.1:subseq_243845,100757_ Strand = - Positions = 49830 - 49760
 Found by:  Infernal (score=27.96) Covels (score=16.82)
 Stem2 length = 7   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -13.83

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[((({{(((((.......--..........)))))}})))]]}..--....)))))))..
 target  CCCAUUUAC---UUAAUGAAGAUGCUCCUGCAAACC--AAUUUGUGUAGGGAGGUUCUGAUAA--AGAUGUAAAUGUU
                         ****           ^^^                       ****