_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-66
 Query name: gi|643357966|gb|AIA98427.1| glutathione peroxidase 1 [Siniperca chuatsi]
 Query range: 2-186  (total 187)

 Target: /data/www-rg/seblastian_results/126860346/tempfiles/temptarget.fasta
 Chromosome: SSNR01000085.1:subseq_772795,100897_ Strand: -
 Positions:
 -Exon 1  50688        50897
 -Exon 2  50003        50347

 Redox box: no

Query   AKFYDLTAKLLTGEMFNFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYASKGLVILGVPCNQFGHQ <---Intron---> ENCKNEEILISLKY
        / || |||||| ||/||||||||||||||||||||||| |||||||||||/|/| ||||||||||||||| <   340bp    > || ||||||/||||
Target  SNFYSLTAKLLNGEVFNFSSLQGKVVLIENVASLUGTTVRDYTQMNELHEQYSSSGLVILGVPCNQFGHQ                ENGKNEEILLSLKY
        tattacagactagggtatttccgaggcagaggtctgaagagtacaagccgcttaagcgacggctactgcc                gagaaggacctcat
        catagtccattagattatcctagattttaatcctggcctgaacataataaaacgggttttgtcgaatgaa                aagaaaatttctaa
        gctcctacggataggtccgttacatcatgtcgtcacgccgtccggcggcggccccgcgcggtcccgcctg                gccgtaacggtggc
                                          *                                                                 

Query   IRPGNGFEPKFQLLEKVDVNGKDAHPLFVFLRETLPFPSDDPTALMNDPKLIMWSPVCRNDVSWNFEKFLIGPDGVPFKRYSRKFLTSDIEGDIKKLLNQ
        /||||||||||||||||||||||||||||||/| || |||||//|| ||| |/||||||||||||||||||| ||||||||||||||||| |||||||||
Target  VRPGNGFEPKFQLLEKVDVNGKDAHPLFVFLKEQLPVPSDDPSSLMADPKFIIWSPVCRNDVSWNFEKFLIGQDGVPFKRYSRKFLTSDIAGDIKKLLNQ
        gccgagtgcatcccgagggagaggccctgtcagcccgcaggcttcaggcataatacgtaaggttatgatcagcgggctactaaatcaagagggaaaccac
        tgcgagtacatattaatatagaacactttttaaatctcgaacccttcacatttggctggaatcgataatttgaagtctagaggattcgatcgataattaa
        cttatctgcgcgcggggtgtggcctcgtgcggggtactttctatggtccgcccgcggcgtcgcgctggccttgtaggcatccggccccccgaccggcccg
                                                                                                            

Query   A
        |
Target  A
        g
        c
        g
         
 Sequence until next stop: 
AAGTAA
 K  * 

 Distance CDS-SECIS: 100 ; UGA-SECIS: 550

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000085.1:subseq_772795,100897_ Strand = - Positions = 49902 - 49831
 Found by:  Infernal (score=41.6) Covels (score=34.72)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -19.76

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((.--....{[[(((((((((((......--.........)))))))))))]]}..--....))))))}).
 target  GGGUUUUUAG--UAAAUGAAGGCAUCCUCUGAAACC--AAGCUGUGAGGAGGAUGCCUGAUGA--GAUGUAAAAGGUG
                         ****           ^^^                       ****