_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-150
 Query name: gi|1007724657|ref|XP_015803576.1| PREDICTED: thyroxine 5-deiodinase-like [Nothobranchius furzeri]
 Query range: 1-268  (total 268)

 Target: /data/www-rg/seblastian_results/870062429/tempfiles/temptarget.fasta
 Chromosome: SSNR01000147.1:subseq_1048676,100740_ Strand: -
 Positions:
 -Exon 1  49970        50773

 Redox box: no

Query   MMDDSGGVQMARTLKHAALCLMLLPRFLLAAVMLWLLDFLCIRRKVLLKMGERQDGPDDPPVCVSDYNKMFTWESLRAVWHGQKLDFLKSAHLGQAAPNT
        |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |/|||||||||||||||||||||||||||||||
Target  MMDDSGGVQMARALKQAALCLMLLPRFLLAAVMLWLLDFLCIRRKVLLKMGERQDGPDDPPVCVSDSNRMFTWESLRAVWHGQKLDFLKSAHLGQAAPNT
        aaggtgggcagagcacggctcacccctccgggactccgtttacaagtcaaggccggcggccgtgtgtaaatatgtcaggtcgcacgtcatgccgcggcaa
        ttaacggtatcgctaacctgttttcgtttcctttgttattgtggatttatgagaagcaacctgtcacagttcgactgctgagaatattaccatgacccac
        ggccctacggggggggacgcggggcccggcccgcgcgccgccggggggagggggcggccgggcgccccggccgggcgcggcagagctcacgcccgtgccc
                                                                                                            

Query   EVVLVQERKQVRLLDCMKGKRPLILNFGSCSUPPFMTRLAAFQRVVRQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLRAAQLMLTEIPG
        ||||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/|||||||||||||||||||||/||
Target  EVVLVQERRQVRLLDCMKGKRPLILNFGSCSUPPFMTRLAAFQRVVRQYADIADFLVVYIEEAHPSDGWVSSDAPFQIPKHRCLEDRLRAAQLMLTEVPG
        gggcgcgcacgcccgtaagaaccacatgatttcctaaccggtccggcctggaggttggtagggcctggtgatggctcacaccttggccaggccacaggcg
        attttaaggatgttagtagagctttatgggcgccttcgtcctagttgaacatcattttataacaccaggtgcacctatcaaggtaagtgccatttcatcg
        ggggcgggggcgcgccggggagccgctccccaggcggcgggtgccgggcgctgctgggtcgggtcgcgggcgcggtgccgcccggcggaccgggccgggg
                                       *                                                                    

Query   SNMVVDNMDNSSNAAYGAYFERLYIVMDETVVYQGGRGPEGYRISELKCWLEQYRKELLVSQTAVLCV
        ||/|||||||||||||||||||||||||| |||||||||||||||||| |||||| |||  |||||||
Target  SNVVVDNMDNSSNAAYGAYFERLYIVMDERVVYQGGRGPEGYRISELKGWLEQYRTELLGPQTAVLCV
        aaggggaagattaggtggttgactagaggaggtcggagcggtcatgcagtcgctaagccgccaggctg
        gatttaataaccaccagcatagtatttaagttaaggggcagagtcataggtaaagcattgcaccttgt
        ccgggccgccgcccgcacctgatccggtggggcgacgtgggcgcaggacggggcgggggtcaatcgcc
                                                                            
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 298 ; UGA-SECIS: 706

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000147.1:subseq_1048676,100740_ Strand = - Positions = 49671 - 49599
 Found by:  Infernal (score=29.68) Covels (score=24.64)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 1
 Free Energy = -18.24

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         .(((({(((---....{[[((((((((((((.....-.........))))))))).)))]]}..--....)))})))).
 target  UCUGGCGUC---UGUGUGAAGUUCGGUUUUUAAAAG-GCGCAUCCAGAAAACCGACACUGAUGU--UCGUGACACCAGC
                         ****           ^^^                        ****