_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-147
 Query name: gi|1007775233|ref|XP_015825394.1| PREDICTED: thyroxine 5-deiodinase [Nothobranchius furzeri]
 Query range: 1-263  (total 263)

 Target: /data/www-rg/seblastian_results/840708046/tempfiles/temptarget.fasta
 Chromosome: SSNR01000028.1:subseq_4198682,100740_ Strand: +
 Positions:
 -Exon 1  49982        50770

 Redox box: no

Query   MMNTIKAIKNAVVCLVLLPRFLMAAVVFWLLDFLCIRKRFFFRMKEQGGDAIDPPLCISDSNRLFSFESLKAVWHGQKLDFLKAAHLGQGAPNTEVVQLE
        |||||||||||/|| ||||||//|||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Target  MMNTIKAIKNAMVCFVLLPRFVVAAVVFWLLDFLCIRKRVFFGMKEQGGDAIDPPLCISDSNRLCSFESLKAVWHGQKLDFLKAAQLGQDAPNTEVVQLE
        aaaaaagaaagagttgcccctggggggttccgtttaaaagttgaagcggggagccctatgtacctatgtcaggtcgcatgtcaggccgcggcaagggccg
        ttactactaacttgttttcgtttcctttgttattgtgagtttgtaaaggactacctgtcacagtggtactactgagaatattaccatgaaccacattata
        ggcttattatagttccggcctggattgcggaccacagagtctggaggattcttttccagcctcccctgctgacgcagagctgaagacaatgaccagcggg
                                                                                                            

Query   DQRRRRILECAADKRPLILNFGSCTUPPFMSRLKAFQGVARQNADIADSVVVYIEEAHPSDGWVSTDAPYQIPRHRCLEDRLNAAQLIHLEVPGCLVVAD
        |||| |||/|| |||||||||||||||||| |||||||||/||||||||||||||||||||||/|||||||| /||||||||||||||||| |||||| |
Target  DQRRSRILDCATDKRPLILNFGSCTUPPFMLRLKAFQGVAQQNADIADSVVVYIEEAHPSDGWMSTDAPYQISKHRCLEDRLNAAQLIHLEAPGCLVVVD
        gcccacacgtgagaaccacatgatatcctacccagtcgggccaggaggtgggtagggcctggtaaaggctcatacctcggacaggccaccggcgtcgggg
        aaggggttagccaagctttatgggcgcctttgtactagtcaaacatcactttataacaccaggtgcaccaatcaaggtaagtaccattataccggtttta
        cggccgccccagcgagcccctccccaggcgggggtcggcgggcacaactaggctgagtctccggcccggcgcggcgtggcggcggggccgggcccggggc
                                 *                                                                          

Query   SMENSSSAAYGAYFNRLYVVQEGQVVYQGGRGPEGYRISELRDWLDQHRKKLEAPNNLVINVD
        |||||||||||||||||||||||||||||||||||||||||||||/|||/ /|  ||||||||
Target  SMENSSSAAYGAYFNRLYVVQEGQVVYQGGRGPEGYRISELRDWLNQHRQNVEMTNNLVINVD
        aagattaggtggttaactggcggcggtcggagcggtcatgcagtcaccacaggaaaacgaagg
        gtaaccgccagcatagtattaagattaaggggcagagtcatgagtaaagaatatcaatttata
        cggcccccgcatttcactggggagaccatcgatgccgccgcacggcacaacgagtttgttcat
                                                                       
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 233 ; UGA-SECIS: 644

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000028.1:subseq_4198682,100740_ Strand = + Positions = 51004 - 51078
 Found by:  Infernal (score=24.49) Covels (score=25.49)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -18.69

         ..(((((((.......(((((((((((((((................))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         (((((((((---(...{[[(({(((((((((................))))))))).}))]]}..--...))))))))))
 target  UCCAGUAUA---GUUGUGAAGUCCGGUUUUUAAAAGGACUCGGUCCAGAAAACCGGUUCUGAUGU--AUUUUAUACUGGA
                         ****           ^^^                         ****