_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-67
 Query name: gi|1007779246|ref|XP_015826976.1| PREDICTED: type I iodothyronine deiodinase [Nothobranchius furzeri]
 Query range: 1-247  (total 248)

 Target: /data/www-rg/seblastian_results/126323419/tempfiles/temptarget.fasta
 Chromosome: SSNR01000011.1:subseq_2657466,100591_ Strand: +
 Positions:
 -Exon 1  49994        50330
 -Exon 2  50416        50559
 -Exon 3  51656        51855
 -Exon 4  52456        52515

 Redox box: no

Query   MFLQKRMVYLSTACMCCYILGTSILLSVLKVLYPKLARRLILKMGESLQMTQNDKFKYEDWGPTLTSFAFMKSVFQSMWLSLGQEAFVGGEAPDSPVVTM
        ||||| ||||||||||||//|  |/|/||||| |||||/ |||||| ||||||||||||||  |||||||/||  ||||||||||||||||||||||/||
Target  MFLQKLMVYLSTACMCCYMMGLGIMLTVLKVLSPKLARKQILKMGEKLQMTQNDKFKYEDWSLTLTSFAFIKSASQSMWLSLGQEAFVGGEAPDSPVITM
        atccacagtttagtatttaagcgaacagcagctcacgaacacaaggaccaacagatatggtacacattgtaatgtcaatctcgcggtgggggcgtcgaaa
        tttaatttatcccgtggattgtgtttcttattccatcgaattatgaatatcaaaataaaaggtctcctcttacccagtgtctgaacttggaccaccttct
        gtcagggttgcagtgcccggacccgcccaatcttaccggacgggtagaagcgtcgtacgcgtgtagccgttagctgcgggccaggcttgaatacatgccg
                                                                                                            

Query   DGEETSICSFLAG <---Intron---> NRPLVLSFGSCTUPPFVSKLDEFKQLVRDFSDVADFLVVYIAEAHPAD <---Intron---> GWAFSNN
        |||| |/  || | <    85bp    > /|||||||||||||||/ ||||||||| ||| ||||||||||||| || <   1096bp   > ||||/||
Target  DGEERSLRCFLRG                DRPLVLSFGSCTUPPFMFKLDEFKQLVSDFSGVADFLVVYIAEAHSAD                GWAFTNN
        ggggaaccttcag                gaccgtatgatatcctatacggtaccgagtaggggtcggtagggctgg                gtgtaaa
        agaaggtggttg                gagctttgtgggcgcctttataataattgatggtcattttatcacacc                aggctcaa
        cagggcccccca                acaggggttatccacgtgcatcgcggccttcccggctggtcctgtcta                tcgccccc
                                                 *                                                          

Query   IDINQHRSLEHRLEAAQILVQNEPLCPVVVDVMSNVAAEKYGAQPERLYVLQARKVLYK <---Intron---> GSMGPWGYSPQEVRSVLQKI
        |||||||||| || ||||||/ /|||||||| |||||//|||||||||||/|| ///|| <   600bp    > |/||||||||||||||||||
Target  IDINQHRSLEDRLSAAQILVRIDPLCPVVVDEMSNVASKKYGAQPERLYVVQAGRIIYK                GAMGPWGYSPQEVRSVLQKI
        agaacccacggcctggcacgcagcctcgggggaaaggtaatggccgactggcggaaata                ggagctgtaccggctgccaa
        tataaaggtaagtcccatttgtactgctttaatgatccaaagcacagtattacggttaa                gctgcggagcaatgcttaat
        tcctgcgcggtggtgtgtgtgtttgttgcgtagccttcagtttacggtcgggaggcctg                ggggtgcctagagcgcgggc
                                                                                                       
 Sequence until next stop: 
AAATAA
 K  * 

 Distance CDS-SECIS: 203 ; UGA-SECIS: 566

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SSNR01000011.1:subseq_2657466,100591_ Strand = + Positions = 52719 - 52794
 Found by:  Infernal (score=31.69) Covels (score=30.89)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -17.89

         ..(((((((........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((((((........{[[{(((((((((...........-----....)))))))))}]]}......-...))))))...
 target  CUGUCUGUGCUCCGUAAUGAAGGUUACAGAUUAAACCUUUA-----GGCCUCUGUAACCAGAUGAAGUG-AAACACAGAACU
                          ****           ^^^                        ****