------- SECIS element -- id:1 -- grade:B ----
 Chromosome = KZ836406.1:subseq_736303,136203_ Strand = - Positions = 128302 - 128230
 Found by:  Covels (score=9.11) SECISearch1.0 (pattern=default)
 Stem2 length = 7   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -9.83

         ..(((((((.........(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         ((({{((((.........([[((({.-(((((......-..........)))))---})))]])..--..-.))))}})))
 target  GCUCCAGCCAGCcgGCCAUGAAGAUA-GGAGCACAAGA-GGCUCAGAGCGUUUC---cUCUGAGUU--UG-AGGCUCCAGC
                           ****            ^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KZ836406.1:subseq_736303,136203_ Strand = - Positions = 103684 - 103613
 Found by:  Infernal (score=10.27) Covels (score=0.83)
 Stem2 length = 7   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -24.99

         ..(((((((.......((((((((((((.....................))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu--u-uuucaugaccggc
         (((((((((---((((([[{(({(((((................-----)))))}))}]])......)-))))))))))))
 target  CUCAGAGGC---UGGGUGAGAGGCCAGGCUUCCAAACGGUAGCU-----CCUGGGCUGGAAGUACUUC-CUGGCUUCUGGG
                         ****           ^^                        ****                    

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KZ836406.1:subseq_736303,136203_ Strand = + Positions = 135714 - 135786
 Found by:  Infernal (score=16.42) Covels (score=11.43)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -14.56

         ..(((((((.......(((((((((((((((..................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..({(({((---....{[[[((((((((((------..............))))))))))]]]}......-...))}))})..
 target  ACCAGGCAU---GACAUGAAGGUGCAGCCA------CACCCUGGAGAGUCUGGCUGUGCUGGAUGGAAAC-GCAGUCCCAGAA
                         ****                  ^^                    ****                   

------- SECIS element -- id:4 -- grade:A ----
 Chromosome = KZ836406.1:subseq_736303,136203_ Strand = - Positions = 48476 - 48402
 Found by:  Infernal (score=32.76) Covels (score=34.67) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -22.39

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((--....([[{(((((({((((................))))}))))))}]])..--...))))))))..
 target  CUGAUGCCAG--AAGAUGACGGUGUGCGCAGAAACCCACCCUGUGGGCUGCCCACAUCCGAGCC--CCCCUGGCGUUUC
                         ****           ^^^                        ****