------- SECIS element -- id:1 -- grade:B ---- Chromosome = KZ836295.1:subseq_2355251,120914_ Strand = + Positions = 14069 - 14131 Found by: SECISearch1.0 (pattern=default) Stem2 length = 9 Apical loop length = 8 Insertion in stem2 = 1, 0 Free Energy = -9.5 ..(((((((.......((((((((((.(((((.................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(([({(({---(...{[[{((((([.{(((------.....-----...)))}])))))}]]}----...)}))})])). target GCAGGCUCC---CCCGUGAGUGGGGGgCGAG------aaGUG-----GGGCUCAAUCCCAGGAC----CCCGAGAUCAUGA **** ^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = KZ836295.1:subseq_2355251,120914_ Strand = - Positions = 41451 - 41365 Found by: Infernal (score=27.93) Covels (score=26.56) SECISearch1.0 (pattern=default) Stem2 length = 10 Apical loop length = 14 Insertion in stem2 = 1, 0 Free Energy = -20.19 ..(((((((......................((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcg---------------UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((((((((....................([[[(((((((.(((......---........))))))))))]]])----..))))))))).. target CAUUCGGCAGUGCAUCGGCGCGGUGCGUCCAUGAAGUCACUGGCCUCAAGCC---CAUGUGGUGGGCAGUGAUGGAA----CAGCUGUCGAGCA **** ^^ ****