------- SECIS element -- id:1 -- grade:C ----
 Chromosome = KZ836402.1:subseq_1293859,100206_ Strand = - Positions = 64029 - 63946
 Found by:  Covels (score=4.47) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -4.16

         ..(((((((............(((((((((((((((.................))))))))))))))).........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ((([{((..............{[[({({(((((((((...............)))))))))})})]]}.....-.-...))}])))
 target  UCUACGAGAGGGcugcaGCAAUGAACCCACUUUUCUAAGCAggAAACAAGCCUAGAGGGGUUGCUGAUUAACc-A-GAGUCAGGGA
                              ****                                       ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KZ836402.1:subseq_1293859,100206_ Strand = + Positions = 80286 - 80358
 Found by:  SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -6.91

         ..(((((((........(((((((..((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgc--cuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({(...........([[[---..(((((((((....--.......)))))))))...]]])..--..-....)}))).
 target  ACUGAGGCACAGaGGCGUGAA---gaAAACCUGCCAAGG--UCACGCAGGUAGGUUUGGGGGAGCC--AG-CAUGCCUAGC
                          ****              ^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KZ836402.1:subseq_1293859,100206_ Strand = - Positions = 13358 - 13285
 Found by:  Infernal (score=10.19)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -11.16

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ......((((......([[{((((({({((......--.........))})})))))}]])..--...))))......
 target  UGAGCCCCUGACUCAGUGACCCUGACCUGAUACAGU--GUUCUGGCCUCUGUUCAGGUGAGAA--UCACAGGCAACCC
                         ****                                     ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = KZ836402.1:subseq_1293859,100206_ Strand = - Positions = 47641 - 47576
 Found by:  Infernal (score=11.41) Covels (score=2.23)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -11.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(([(((((---(...([[{(([((([(((.........-----...)))])))]))}]])----...))))))])).
 target  UUCAUCUGU---CCAAUGACUUGUCAAAUGACAUCCAGU-----GACCGUGUGGAAAUGAG----AAAGGCAGAGGGC
                         ****                                     ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = KZ836402.1:subseq_1293859,100206_ Strand = + Positions = 44696 - 44799
 Found by:  Infernal (score=13.16) Covels (score=13.15) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 1
 Free Energy = -9.19

         ..(((((((.........................(((((((((((((((.....................))))))).))))))))..........)))))))..
 model   uucggucaugcg------------------UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         ..((((({((((......................{[[(((((({((((.......................))))}).)))))]]}......-))))})))))..
 target  CCUCCAUGAUGUCGAUGCACAAUGGACGCAUGAAUGAAUGCAUGAUUUCAAUUCAUGAUGAAUGCAUGAAUGAAUGAAUGCAUGAUGUCAAU-GCGUGAUGGAUG
                                           ****           ^^                               ****