------- SECIS element -- id:1 -- grade:B ---- Chromosome = KZ836278.1:subseq_603498,100179_ Strand = - Positions = 42441 - 42367 Found by: Infernal (score=10.82) Covels (score=1.29) Stem2 length = 10 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -19.19 ..(((((((............(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .((({({(((...........([[{((((((((((------...........))))))))))}]])..--...)))})}))). target UGAGAUCGAGCUCCACAAGGGCGAUGGUAGGCUCC------AUGCUCAGGGGGGAGUCUGCUUGAGAU--UCUCUCCACCUCC **** **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = KZ836278.1:subseq_603498,100179_ Strand = + Positions = 52091 - 52161 Found by: Infernal (score=27.76) Covels (score=22.09) SECISearch1.0 (pattern=default) Stem2 length = 8 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -17.69 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .({((((((---....([[{{((((((({(......-..........)})))))))}}]])..--..-.))))))}). target UCCGGUCAC---UACAUGAUGCACUCUGAUGAAACC-CUUCCAGGCAGCCAGAGUGGUGAAGA--UC-UGUGACCUGC **** ^^^ ****