------- SECIS element -- id:1 -- grade:B ---- Chromosome = KZ836331.1:subseq_18992969,148998_ Strand = - Positions = 43624 - 43545 Found by: Covels (score=7.97) SECISearch1.0 (pattern=default) Stem2 length = 10 Apical loop length = 14 Insertion in stem2 = 0, 2 Free Energy = -10.81 ..(((((((.............(((((((((((((((...............))))))).)).))))))........))))))).. model uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-gg-cCuGAUGuuuuuucaugaccggc ...(((((..............([[{((((({(((((.....-.........)))))}).)).))}]])----..-..)))))... target ACCAGGGGUCUCacacguGACGUGACGGCCACGGGCGGAACG-GAAUCCAUGUGCCCCUcGGuCCUGAA----AA-CCUUCCUAAG **** ^^ **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = KZ836331.1:subseq_18992969,148998_ Strand = + Positions = 20691 - 20764 Found by: Infernal (score=10.27) Covels (score=6.2) Stem2 length = 8 Apical loop length = 17 Insertion in stem2 = 0, 2 Free Energy = -20.03 ..(((((((.......(((((((((((((((...............)))))))..))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca--ggcCuGAUGuuuuuucaugaccggc ((((((((((--....{[[({({(((((((.................))))))..)})})]]}..--.--)))))))))) target ACCUGGUCCU--UACAUGAAACCAGCGGUCCACGAAACCCACGUUCAGACCGCUCUUGCUGAUGC--C--GGGACUGGGU **** ****