------- SECIS element -- id:1 -- grade:B ----
 Chromosome = KZ836236.1:subseq_50700502,102660_ Strand = - Positions = 12809 - 12733
 Found by:  Covels (score=4.25) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -5.77

         ..(((((((.........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         .....({[(.........([[{((({((((((......--.........))))))})))}]]).......-...)]})---..
 target  GAAGCGGACUCAgaGAGGUGAAGUCACUUGCCUAAGAA--CACACAGCUGGUGAGCGGCAGAACAAauAa-UUUGGGC---UC
                           ****           ^^                        ****                    

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KZ836236.1:subseq_50700502,102660_ Strand = + Positions = 100971 - 101049
 Found by:  SECISearch1.0 (pattern=default)
 Stem2 length = 12   Apical loop length = 10   Insertion in stem2 = 0, 1
 Free Energy = -9.7

         ..(((((((.........(((((((((((((((...............))))))))).))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu-u-uuucaugaccggc
         .({(({((((((......([[{([(((((((((((((.---...)))))))))))).)])}]])......-))))))}))}).
 target  AUCAACAGUUUUaaUCUAUGAAUAUUGACUUGGCAAGA---GAAUUUGUUGAGUUAGgGGAGAAUAUaAa-AGAGCUCUUAGG
                           ****            ^^                        ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KZ836236.1:subseq_50700502,102660_ Strand = + Positions = 78240 - 78317
 Found by:  Covels (score=1.03) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 1, 0
 Free Energy = -7.1

         ..(((((((........((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((..........{[[[[{[(((.((((.................)))))))]}]]]]}..--......)))))..
 target  CAUCCUGCCCCCuAGCAUGAAACAUCUgACCUACAAACUAGAGUAUGGGGGGUGGGGUGGGAUCA--GGGCCCCAGGACU
                          ****             ^^^                      ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = KZ836236.1:subseq_50700502,102660_ Strand = + Positions = 55599 - 55671
 Found by:  Covels (score=6.33) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -12.4

         ..(((((((...............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(--((((...............{[[(((((([{((((.....-..-----..))))}]))))))]]}..--....))))---).
 target  UGA--GUCUUAGaauccggaGCUAUGACAUCUCGACUCUAAGGG-CC-----UGAGAGCAGAGAUGGACAU--GCCCAGAC---UG
                                 ****           ^^                        ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = KZ836236.1:subseq_50700502,102660_ Strand = + Positions = 31772 - 31847
 Found by:  Covels (score=1.87) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -7.85

         ..(((((((.............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((({(..............{[[(([((({((({(.....--........)})))})))]))]]}----.--..)}))))))
 target  GUGUACCUUUCUcucuggAGCAUGAUCAGGGUUGUUUAAUGC--AGGUUUGGAUACAUCCUGGAGAU----C--UCAUGUACGC
                               ****           ^^                        ****                 

------- SECIS element -- id:6 -- grade:A ----
 Chromosome = KZ836236.1:subseq_50700502,102660_ Strand = - Positions = 49365 - 49286
 Found by:  Infernal (score=21.79) Covels (score=27.77) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -12.85

         ..(((((((..............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({([(((((.............([[{(({(((({(((.....--........)))}))))}))}]])..--..-)))))])}).
 target  CCGUGUCAGGAAUGGCAUCUCCAUGAAGGAGGGGCCCGAAGCC--CUUAUGGGCGGACCUCCCCCGAGCC--UG-UCUGAAGGGC
                                ****           ^^                        ****