------- SECIS element -- id:1 -- grade:B ----
 Chromosome = KZ836243.1:subseq_3094930,100797_ Strand = - Positions = 53761 - 53683
 Found by:  SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -17.6
 Type = 1

         ..(((((((........(((((((((((((((.....................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(({((....--..{[[(((((((({(((.....................)))}))))))))]]}----....))}))....
 target  GAGCCCCCAGAGc--AGUGACAGCCCUACGGACAAGUgcugcuCUCCCGAGCUUCCCUGGGGCUGGAC----GGGGUGCGGAGUC
                          ****            ^^                             ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KZ836243.1:subseq_3094930,100797_ Strand = - Positions = 8138 - 8072
 Found by:  Infernal (score=10.32) Covels (score=7.55)
 Stem2 length = 8   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -9.5
 Type = 1

         ..(((((((.......((((((((((.((.(((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gc-ccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .((({((((((.....{[[{(((((({--.((......--------...))--}))))))}]]}..--..))))))}))).
 target  AUAAAGGCAUAAAGAUUGAAGUCAGAA--CAGCAAAAC--------CAUCU--CUCUGGCAGAUGU--CAUGUGUCCUUAC
                         ****             ^^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KZ836243.1:subseq_3094930,100797_ Strand = - Positions = 43014 - 42942
 Found by:  Infernal (score=10.67)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 1
 Free Energy = -8.97
 Type = 1

         ..(((((((.......(((((((((((((((................))))))).).)))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggcca-g-gcCuGAUGuuuuuucaugaccggc
         .(((((({(---....{[[((([{-[((((..................)))).-]-}])))]]}..--....)})))))).
 target  UUGGUUCAC---GUGAUGAUGGAA-GCUGAGAAGUCUAGGAUUUGCAAUCAGC-A-AGCCAGACAC--CCAGGAGAGCCAU
                         ****           ^^                           ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = KZ836243.1:subseq_3094930,100797_ Strand = + Positions = 31407 - 31480
 Found by:  Infernal (score=12.04) Covels (score=10.71) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -13.08
 Type = 1

         ..(((((((.......((((((((((((.(((................))).)))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgg-gccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.--....([[{(((([((({(...........-----....)})))]))))}]]).....-...))))))...
 target  CAGGGAAUUG--UUUGUGAAGUCCAGGACUGAAAAACAUAG-----GGAGACUCCGGGACAGAGCUGGG-AAAAAUUCCAGG
                         ****           ^^^                          ****                  

------- SECIS element -- id:5 -- grade:A ----
 Chromosome = KZ836243.1:subseq_3094930,100797_ Strand = - Positions = 49407 - 49338
 Found by:  Infernal (score=20.87) Covels (score=28.54) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -24.73
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((([(((---(...([[{(((((({(((.................)))}))))))}]])----..-))))])))))
 target  GCCCCACUG---CUGAUGACGAGCUGUCUCUAACUGGUCUUGACCACGAGCUGGUUCUGAA----CU-GCAGGGGGGC
                         ****           ^^                        ****