_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:4     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-18
 Query name: gi|6649223|gb|AAF21431.1|AF166126_1 selenoprotein Zf1 [Homo sapiens]
 Query range: 1-277  (total 277)

 Target: /data/www-rg/seblastian_results/188046870/tempfiles/temptarget.fasta
 Chromosome: KZ836406.1:subseq_736303,136203_ Strand: -
 Positions:
 -Exon 1  69806        69838
 -Exon 2  67187        67361
 -Exon 3  57272        57408
 -Exon 4  54028        54123
 -Exon 5  53650        53742
 -Exon 6  52051        52122
 -Exon 7  51774        51871
 -Exon 8  49900        50026

 Redox box: no

Query   MRSIPLRGFDQ <---Intron---> QMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG <---Intron---
        /|||||||||| <   2444bp   > ||||/| |/||| |||||||| |||||| ||||||||||| |/|||| |||/||||| | <   9778bp   
Target  IRSIPLRGFDQ                QMSSLVTEYMASQGTRFLRGCTPSRVRRRPDGQLQVTWEDLTSGKEDMGTFNTVLWATG              
        aaaacccgtgc                catttgagtagtcgactcagtactagcaccggcccgatggcatgaggagataagctgag              
        tggtctggtaa                atccttcaatccagcgttgggcccgtgggcagatatcgaatccgaaatgctacttgcc               
        aaccccgctcg                agtcgcaacgctaccgcgactccaagggcatcgcgtcggcccccggcgcccctcggca               
                                                                                                            

Query   > RVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE <---Intron---> GRPELTPTAIMAGRLLVQRLFGGSSDLMDYDN <---
        > |/|/|||||||||||/ /|//||||||//| ||/||||||||| | <   3148bp   > |||||||||||||/|| ||| | |||/||||| <   
Target    RIPETRSLNLEKAGVNVNPNSQKILVDAQETTSIPHIYAIGDVAE                GRPELTPTAIMAGKLLAQRLCGQSSDVMDYDN     
          cacgaaacacgagggagacaacaacgggcgaataccatgaggggg                gccgcacagaaggaccgccctgcttggagtga     
         ggtcacggtataacgtatacagaatttacaaccctcatactgatca                ggcatccccttcgattcagtggaccattaaaa     
         tataacatgtaggtaaccccctgacgcttgaccccccttccataag                ggcggacgtagaagcgcgggctgcacggctct     
                                                                                                            

Query   Intron---> VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE <---Intron---> VYHAHYKPLEFTVAGRDASQCYVK <---Intron---> MV
        285bp    > ||||||||||||||||||||||||||/|||| <   1527bp   > ||||/||||||||| |||||||/| <   179bp    > ||
Target             VPTTVFTPLEYGCVGLSEEEAVARHGEEHVE                VYHAYYKPLEFTVAERDASQCYIK                MV
                   gcaagtaccgtgtggctggggggccgggcgg                gtcgttaccgtagggcggtcttaa                ag
                   tcccttcctaaggtgtcaaactcgagaaata                taacaaactatctcagaccagata                tt
                   cccacccgagtctgggagggcgtccaagtgg                tttgttagggcagtagtacgtcag                gg
                                                                                                            

Query   CLREPPQLVLGLHFLGPNAGEVTQGFALGIK <---Intron---> CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        |||/||||||||||||||||||||||||||| <   1747bp   > ||||| ||||||||||||/||| |||||||||||||||||||
Target  CLRKPPQLVLGLHFLGPNAGEVTQGFALGIK                CGASYVQVMRTVGIHPTCAEEVAKLRISKRSGLDPTVTGCUG
        tccaccccgcgcctcgcaggggacgtgcgaa                tggttgcgacaggaccatgggggaccatactgcgcagagttg
        gtgaccatttgtattgcacgatcagtctgta                ggccatattgctgtaccgcaatcatgtcagcgtacctcgggg
        tgggcaggagcgctccccacagtaattggc                gtgcctgagggggctcccccgggcggtccgcacgcctgaccac
                                                                                               * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1423 ; UGA-SECIS: 1426

------- SECIS element -- id:4 -- grade:A ----
 Chromosome = KZ836406.1:subseq_736303,136203_ Strand = - Positions = 48476 - 48402
 Found by:  Infernal (score=32.76) Covels (score=34.67) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -22.39

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((--....([[{(((((({((((................))))}))))))}]])..--...))))))))..
 target  CUGAUGCCAG--AAGAUGACGGUGUGCGCAGAAACCCACCCUGUGGGCUGCCCACAUCCGAGCC--CCCCUGGCGUUUC
                         ****           ^^^                        ****