_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-09
 Query name: gi|961759353|ref|XP_014938519.1| PREDICTED: selenoprotein W, partial [Acinonyx jubatus]
 Query range: 7-120  (total 120)

 Target: /data/www-rg/seblastian_results/858055594/tempfiles/temptarget.fasta
 Chromosome: KZ836356.1:subseq_2902372,100191_ Strand: -
 Positions:
 -Exon 1  88579        88610
 -Exon 2  73107        73158
 -Exon 3  50536        50589
 -Exon 4  50376        50429
 -Exon 5  50117        50191
 -Exon 6  49952        50029

 Redox box: no

Query   SRFPSCLPAAC <---Intron---> LFPPPPPDPHRFPLSPG <---Intron---> THSLG-PPTSGAUGYKSK <---Intron---> YLQLKK
         |||/||     <  15420bp   > /  ||||||   | |   <  22517bp   > || || |||||||||||| <   106bp    > ||||||
Target  ERFPTCLKPHR                VSVPPPPDPSSLPDSGI                THPLGPPPTSGAUGYKSK                YLQLKK
        gatcattacca                gagccccgcttccgtga                acccgcccaaggtgtata                tcccaa
        agtccgtacag                tgtccccaccctcacgt                cactgccccggcggaaca                atataa
        ggtttcagac                agtccacacatcggctcc                tcttactcctctaccgcg                ttgcgg
                                                                                *                           

Query   KLEDEFPGCLDI <---Intron---> CGEGTPQATGFFEVMVGGKLVHSKK <---Intron---> RGDGYVDTESKFLKLVAAIKAAMAQG
        |||||||||||| <   184bp    > |||||||||||||||| |||||||| <    87bp    > ||||||||||||||||||||||/|||
Target  KLEDEFPGCLDI                CGEGTPQATGFFEVMVAGKLVHSKK                RGDGYVDTESKFLKLVAAIKAALAQG
        atgggtcgtcga                tgggaccgagttggagggacgctaa                agggtggagaatcacgggaaggtgcg
        ataaatcggtat                ggagccaccgttatttcgattacaa                ggagatacagattattcctacctcag
        gaatgccacgcc                ccggtcgctcctaggacgggtccgg                attccgcagcgtggggaccgccgtgc
                                                                                                       
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1479 ; UGA-SECIS: 1701

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ836356.1:subseq_2902372,100191_ Strand = - Positions = 48472 - 48392
 Found by:  Infernal (score=32.92) Covels (score=36.16) SECISearch1.0 (pattern=default)
 Stem2 length = 11   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -21.93

         ..(((((((........(((((((((((((((..................))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((([(........{[[{(((((((((((..................)))))))))))}]]}.....-.-.)])))))..
 target  UCGUGGCAGACGCUUCAUGACGGGAAGGACUGAAAUGUCUCAUGGACGCCUGGUCUUUCCCUGAUGUCCC-U-GCGGCCGCCG
                          ****           ^^^                          ****