_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-20
 Query name: gi|859786738|ref|XP_004750804.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Mustela putorius furo]
 Query range: 1-115  (total 116)

 Target: /data/www-rg/seblastian_results/975891946/tempfiles/temptarget.fasta
 Chromosome: KZ836278.1:subseq_603498,100179_ Strand: +
 Positions:
 -Exon 1  48373        48427
 -Exon 2  50001        50149
 -Exon 3  50364        50478
 -Exon 4  51603        51628

 Redox box: no

Query   MSFCSFSGGEIFQNHFEPG <---Intron---> VYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPERNSPDALK <---Intron---> 
        |||||| |||/|||||||| <   1573bp   > |||||||||||||||||||||||||||||||||||| ||||||||/||| <   214bp    > 
Target  MSFCSFFGGEVFQNHFEPG                VYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVDKRPERNSPEALK                
        atttattggggtcactgcg                gtgtgatgtgcttactatgcttctcgtagaacggaggaccgcatcggta                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtaagcagaccacta                
        ggcccccgcgtcgcctgg                tctgccgtctgtccccagcacacggccctgctttttgcgtagccatacag                
                                                                                                            

Query   VSCGRCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFIPKG <---Intron---> KGTSGSQE
        ||||/|||||||||||||||||||||||||||||||||| <   1124bp   > ||||||||
Target  VSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFIPKG                KGTSGSQE
        gttgatgagcgcgtcaggcacgctcttataatcatacag                agatgtcg
        tcggaggagtgaattaagcacgacgtgttggctattca                gagccgcaa
        gcccatgcggctgcgttccggggcccaatctcggccga                caattctgg
                                  *                                    
 Sequence until next stop: 
CTGTAG
 L  * 

 Distance CDS-SECIS: 462 ; UGA-SECIS: 522

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = KZ836278.1:subseq_603498,100179_ Strand = + Positions = 52091 - 52161
 Found by:  Infernal (score=27.76) Covels (score=22.09) SECISearch1.0 (pattern=default)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -17.69

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....([[{{((((((({(......-..........)})))))))}}]])..--..-.))))))}).
 target  UCCGGUCAC---UACAUGAUGCACUCUGAUGAAACC-CUUCCAGGCAGCCAGAGUGGUGAAGA--UC-UGUGACCUGC
                         ****           ^^^                       ****