_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-84
 Query name: gi|823424060|ref|XP_004409206.2| PREDICTED: LOW QUALITY PROTEIN: selenoprotein P [Odobenus rosmarus divergens]
 Query range: 1-386  (total 386)

 Target: /data/www-rg/seblastian_results/226167426/tempfiles/temptarget.fasta
 Chromosome: KZ836236.1:subseq_59438354,100611_ Strand: +
 Positions:
 -Exon 1  43121        43323
 -Exon 2  44087        44299
 -Exon 3  45767        45884
 -Exon 4  50000        50614

 Redox box: YES

Query   MWRSLGLALALCLLPWGGAESQGQSSFCKPPPAWSIGDQNPMVNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRIKLEKEGYLNI
        |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| <   763bp    > |||||/||||||||||
Target  MWRSLGLALALCLLPWGGAESQGQSSLCKPPPAWSIGDQNPMVKSSGSVTVVALLQASUYLCILQASR                LEDLRVKLEKEGYLNI
        ataacgcgcgctccctggggacgcatctacccgtaaggcacagatagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttcgggcagagagctgaccccggtgaaacttacggctcttcttacggatgttaccg                taatgtataaagatat
        ggacggtcgtcttcagaaagcgaaccttggtacgcagtataggaattagaggcttaccacgctggac                agacgaaaggaaatgcc
                                                                  *                                         

Query   SYVVVNHQGLSSQLKYMHLKNKVSEYIAVYQQEENQTDVWTLLNGKKEDFLIYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKITYC
        |||||||||||||||||||||||||||||||||||||||| |||||||||||||| <   1467bp   > |||||||||||||||||||/|||||||||
Target  SYVVVNHQGLSSQLKYMHLKNKVSEYIAVYQQEENQTDVWMLLNGKKEDFLIYDR                CGRLVYHLGLPYSFLTFPYIEEAIKITYC
        ttgggaccgcttctataccaaagtgtaggtccggacaggtactagaaggtcatga                tgccgtccgtctttcatctagggaaaatt
        catttaaagtccataatataaatcaatctaaaaaaacatgtttagaaaatttaag                gggttaatgtcacttctcataactatcag
        tttttttaatttaaatgttatgtagtttttaaaacaatcggcatgaggcccatc                atcttactttgtcccatcgtaaactatttt
                                                                                                            

Query   KERCGSCSLT <---Intron---> TLEAEDFCKMVCLATVGDTTEAPQPHHHHHHHHHHHHRHHHKHGHQHHGIDGVSENQQPEAPDTAEHPTPXGLH
        ||/||||||  <   4115bp   > |||/|||||||  ||||/|||||||   ||||||||||||||||||||||||||||||||||| |||||| |||
Target  KEKCGSCSLM                TLESEDFCKMVSSATVGNTTEAPQP---HHHHHHHHHRHHHKHGHQHHGIDGVSENQQPEAPDAAEHPTPUGLH
        agatgattca                acgtggttaagttgaggaaaggccc---cccccccccccccacgccccgagggtgacccggcggggccactgcc
        aaaggggctt                ctacaatgattcccctgaccaccac---aaaaaaaaagaaaaagaaaagtagtcaaaacaccaccaacccggta
        aggtacctcg                cgatacctagatgttgacatgtcga---tcccccccttttcgtgtgttgttgtagtgaaacatttgtcttacct
                                                                                                        *   

Query   RHHKHKNHQREGHPDTUDLPAGSESSQPSVPQKRLURKGCINQLLCKLPKDSGLAPNSCCUHURHLIFEKTGSAITUQCKESLPSLCSUQGLWAEENVIE
         |||||||||||||/|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Target  CHHKHKNHQREGHPETUDLPAGSESLQPSVPQKRLURKGCINQLLCKLPKDSGLAPNSCCUHURHLIFEKTRSAITUQCKESLPSLCSUQGLWAEENVIE
        tccacaaccaggccgatgccggagatcctgccaactcagtaactctatcagtgtgcaatttctcccatgaaatgaatctagacctctatcgctgggagag
        gaaaaaaaagagacacgatccggagtacctcaagtggaggtaattgatcaacgtccaggggaggatttaacgcctcgagaagtcctgggagtgcaaatta
        cctacgccaagccagcatgaaatataatttaaggcaagatataaccagtataggctcctcacaatgataaagtaccaataaccctaccagatgaggccta
                        *                  *                        * *             *           *           

Query   SUQURLPPAAUQASQQLQPTEASTNUSUKHKAKM
        ||||||||||||||||||||||||||||||||||
Target  SUQURLPPAAUQASQQLQPTEASTNUSUKHKAKM
        ttctctccggtcgacccccaggaaatatacagaa
        cgaggtccccgacgaataccacgcagggaaacat
        tagatatatcaaatggtgcaaccctacaatgcag
         * *      *              * *      
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 274 ; UGA-SECIS: 292

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = KZ836236.1:subseq_59438354,100611_ Strand = + Positions = 50889 - 50958
 Found by:  Infernal (score=28.58) Covels (score=31.6) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -12.64

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((---....{[[{((((((((({(.....-.........)})))))))))}]]}----....)))))})..
 target  CUGCUUGCU---UCAAUGAGAACAGAGACGUAAACU-AUGACCUAGGGGUUUCUGUUGGAU----AGUUAGCAAUUUA
                         ****           ^^^                       ****                 
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-84
 Query name: gi|823424060|ref|XP_004409206.2| PREDICTED: LOW QUALITY PROTEIN: selenoprotein P [Odobenus rosmarus divergens]
 Query range: 1-386  (total 386)

 Target: /data/www-rg/seblastian_results/226167426/tempfiles/temptarget.fasta
 Chromosome: KZ836236.1:subseq_59438354,100611_ Strand: +
 Positions:
 -Exon 1  43121        43323
 -Exon 2  44087        44299
 -Exon 3  45767        45884
 -Exon 4  50000        50614

 Redox box: YES

Query   MWRSLGLALALCLLPWGGAESQGQSSFCKPPPAWSIGDQNPMVNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRIKLEKEGYLNI
        |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| <   763bp    > |||||/||||||||||
Target  MWRSLGLALALCLLPWGGAESQGQSSLCKPPPAWSIGDQNPMVKSSGSVTVVALLQASUYLCILQASR                LEDLRVKLEKEGYLNI
        ataacgcgcgctccctggggacgcatctacccgtaaggcacagatagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttcgggcagagagctgaccccggtgaaacttacggctcttcttacggatgttaccg                taatgtataaagatat
        ggacggtcgtcttcagaaagcgaaccttggtacgcagtataggaattagaggcttaccacgctggac                agacgaaaggaaatgcc
                                                                  *                                         

Query   SYVVVNHQGLSSQLKYMHLKNKVSEYIAVYQQEENQTDVWTLLNGKKEDFLIYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKITYC
        |||||||||||||||||||||||||||||||||||||||| |||||||||||||| <   1467bp   > |||||||||||||||||||/|||||||||
Target  SYVVVNHQGLSSQLKYMHLKNKVSEYIAVYQQEENQTDVWMLLNGKKEDFLIYDR                CGRLVYHLGLPYSFLTFPYIEEAIKITYC
        ttgggaccgcttctataccaaagtgtaggtccggacaggtactagaaggtcatga                tgccgtccgtctttcatctagggaaaatt
        catttaaagtccataatataaatcaatctaaaaaaacatgtttagaaaatttaag                gggttaatgtcacttctcataactatcag
        tttttttaatttaaatgttatgtagtttttaaaacaatcggcatgaggcccatc                atcttactttgtcccatcgtaaactatttt
                                                                                                            

Query   KERCGSCSLT <---Intron---> TLEAEDFCKMVCLATVGDTTEAPQPHHHHHHHHHHHHRHHHKHGHQHHGIDGVSENQQPEAPDTAEHPTPXGLH
        ||/||||||  <   4115bp   > |||/|||||||  ||||/|||||||   ||||||||||||||||||||||||||||||||||| |||||| |||
Target  KEKCGSCSLM                TLESEDFCKMVSSATVGNTTEAPQP---HHHHHHHHHRHHHKHGHQHHGIDGVSENQQPEAPDAAEHPTPUGLH
        agatgattca                acgtggttaagttgaggaaaggccc---cccccccccccccacgccccgagggtgacccggcggggccactgcc
        aaaggggctt                ctacaatgattcccctgaccaccac---aaaaaaaaagaaaaagaaaagtagtcaaaacaccaccaacccggta
        aggtacctcg                cgatacctagatgttgacatgtcga---tcccccccttttcgtgtgttgttgtagtgaaacatttgtcttacct
                                                                                                        *   

Query   RHHKHKNHQREGHPDTUDLPAGSESSQPSVPQKRLURKGCINQLLCKLPKDSGLAPNSCCUHURHLIFEKTGSAITUQCKESLPSLCSUQGLWAEENVIE
         |||||||||||||/|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Target  CHHKHKNHQREGHPETUDLPAGSESLQPSVPQKRLURKGCINQLLCKLPKDSGLAPNSCCUHURHLIFEKTRSAITUQCKESLPSLCSUQGLWAEENVIE
        tccacaaccaggccgatgccggagatcctgccaactcagtaactctatcagtgtgcaatttctcccatgaaatgaatctagacctctatcgctgggagag
        gaaaaaaaagagacacgatccggagtacctcaagtggaggtaattgatcaacgtccaggggaggatttaacgcctcgagaagtcctgggagtgcaaatta
        cctacgccaagccagcatgaaatataatttaaggcaagatataaccagtataggctcctcacaatgataaagtaccaataaccctaccagatgaggccta
                        *                  *                        * *             *           *           

Query   SUQURLPPAAUQASQQLQPTEASTNUSUKHKAKM
        ||||||||||||||||||||||||||||||||||
Target  SUQURLPPAAUQASQQLQPTEASTNUSUKHKAKM
        ttctctccggtcgacccccaggaaatatacagaa
        cgaggtccccgacgaataccacgcagggaaacat
        tagatatatcaaatggtgcaaccctacaatgcag
         * *      *              * *      
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 716 ; UGA-SECIS: 734

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KZ836236.1:subseq_59438354,100611_ Strand = + Positions = 51331 - 51396
 Found by:  Infernal (score=29.11) Covels (score=13.81) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -10.9

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....([[{(((({(.((((......--.-----...)))))}))))}]])..--..-.))))))...
 target  UUUCCAUAG---UCAAUGAUGGUUCAGUAGGUAAACC--A-----AGUCCUAUAAACCUGAACU--CC-UUUAUGGUUA
                         ****            ^^^                       ****